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CsGy3G035260 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G035260
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr3:33777215..33777445
RNA-Seq ExpressionCsGy3G035260
SyntenyCsGy3G035260
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053887.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.69e-2685.45Show/hide
Query:  MLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKI-CKSNPRIGESVAAIVAWGKLK
        MLNPK+ N+HAE YFPLYGELQMEDEV RVWKI CKSNPRIGE +AAIVAWGKLK
Subjt:  MLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKI-CKSNPRIGESVAAIVAWGKLK

KAG6580881.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.62e-1462.07Show/hide
Query:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
        K  + +N K    H     PLYGELQMEDEV R+WKIC+SNPR  E +AAIVAWGKLK
Subjt:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

KAG6596160.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.14e-1455.88Show/hide
Query:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
         L+ K     K  + ++ K          PLYGELQMEDEV RVWKIC++NPRI ES+AAIVAWGKLK
Subjt:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

XP_022934674.1 pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita moschata]1.62e-1455.88Show/hide
Query:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
         L+ K     K  + +N K    H     PLYGELQMEDEV R+WKIC+SNPR  E +AAIVAWGKLK
Subjt:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

XP_023527069.1 pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita pepo subsp. pepo]1.19e-1455.88Show/hide
Query:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
         L+ K     K  + +N K    H     PLYGELQMEDEV R+WKIC+SNPR  E +AAIVAWGKLK
Subjt:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

TrEMBL top hitse value%identityAlignment
A0A0A0LCC4 Uncharacterized protein1.39e-49100Show/hide
Query:  MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFILL
        MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFILL
Subjt:  MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFILL

A0A1S3B8B0 pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X15.10e-1458.62Show/hide
Query:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
        K  + +N K       F  PLYGELQMEDEV R+W+IC+SNP + E +AAIVAWGKLK
Subjt:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

A0A5D3DPP2 Pentatricopeptide repeat-containing protein8.18e-2785.45Show/hide
Query:  MLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKI-CKSNPRIGESVAAIVAWGKLK
        MLNPK+ N+HAE YFPLYGELQMEDEV RVWKI CKSNPRIGE +AAIVAWGKLK
Subjt:  MLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKI-CKSNPRIGESVAAIVAWGKLK

A0A6J1F3A2 pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like7.86e-1555.88Show/hide
Query:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
         L+ K     K  + +N K    H     PLYGELQMEDEV R+WKIC+SNPR  E +AAIVAWGKLK
Subjt:  SLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

E5GBN6 DNA-binding protein (Fragment)4.93e-1458.62Show/hide
Query:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
        K  + +N K       F  PLYGELQMEDEV R+W+IC+SNP + E +AAIVAWGKLK
Subjt:  KRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK

SwissProt top hitse value%identityAlignment
Q9C977 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial1.0e-0559.46Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +Y  L  EDEV R+WKIC+S P   ES+AAI A+GKL
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

Q9XI21 Pentatricopeptide repeat-containing protein At1g15480, mitochondrial1.4e-0764.86Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +YG LQ EDEV RVWKIC+ NPR  E +AAI+A+GK+
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

Arabidopsis top hitse value%identityAlignment
AT1G15480.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-0864.86Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +YG LQ EDEV RVWKIC+ NPR  E +AAI+A+GK+
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

AT1G80270.1 PENTATRICOPEPTIDE REPEAT 5967.3e-0759.46Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +Y  L  EDEV R+WKIC+S P   ES+AAI A+GKL
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

AT1G80270.2 PENTATRICOPEPTIDE REPEAT 5967.3e-0759.46Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +Y  L  EDEV R+WKIC+S P   ES+AAI A+GKL
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

AT1G80270.3 PENTATRICOPEPTIDE REPEAT 5967.3e-0759.46Show/hide
Query:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL
        +Y  L  EDEV R+WKIC+S P   ES+AAI A+GKL
Subjt:  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL

AT3G15590.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.8e-0443.59Show/hide
Query:  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK
        PLY ++   D V R+ +    NPR    ++AI AWGKLK
Subjt:  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAGGTGAGCTTAAGGACAAAGCCATGTCGATTTCAAAAGAGATGGAAGATGTTAAATCCAAAGGTCCGCAACGACCATGCAGAATTTTACTTCCCCCTTTATGG
AGAACTTCAAATGGAAGATGAAGTGGGGAGGGTGTGGAAGATCTGCAAATCAAATCCTCGTATTGGAGAATCCGTGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGTTCA
TATTGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAGGTGAGCTTAAGGACAAAGCCATGTCGATTTCAAAAGAGATGGAAGATGTTAAATCCAAAGGTCCGCAACGACCATGCAGAATTTTACTTCCCCCTTTATGG
AGAACTTCAAATGGAAGATGAAGTGGGGAGGGTGTGGAAGATCTGCAAATCAAATCCTCGTATTGGAGAATCCGTGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGTTCA
TATTGCTGTAG
Protein sequenceShow/hide protein sequence
MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFILL