; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy3G035293 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G035293
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionVQ domain-containing protein
Genome locationGy14Chr3:33808466..33809639
RNA-Seq ExpressionCsGy3G035293
SyntenyCsGy3G035293
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]2.63e-63100Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNP
        MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNP
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNP

Query:  L
        L
Subjt:  L

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]3.87e-7687.5Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPAS CEI+ +D +EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]3.48e-93100Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
        ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.74e-3255.56Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSC----DDDFLRSSYESLEDILRRDV-MENFGAISTSL
          L  ++     +DDFL S YES E++L R++ MENF   S S+
Subjt:  ELLIDSSC----DDDFLRSSYESLEDILRRDV-MENFGAISTSL

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.03e-2047.93Show/hide
Query:  RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLI--------DSSCDDDFL
        RKRK C+   QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA      KF P++S E     +   + +  + ++D+Q+LL+        DSS  DDFL
Subjt:  RKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLI--------DSSCDDDFL

Query:  RSSYESLEDILRRDVMENFGA
          SYESLE I  RD+++   A
Subjt:  RSSYESLEDILRRDVMENFGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein1.68e-93100Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
        ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV

A0A1S3B8H6 uncharacterized protein LOC1034871671.88e-7687.5Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPAS CEI+ +D +EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV

A0A5A7SJV9 Sigma factor binding protein 22.75e-1945.05Show/hide
Query:  RKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLI----------DSSCDDDFL
        ++S ++ K+P+KVVYISNPM+V TSASEF ALVQELTG+DA+FPDP+KF P++ C+     D     V+  G++D    LI          D   +DD L
Subjt:  RKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLI----------DSSCDDDFL

Query:  RSSYESLEDIL
         S Y+  +D++
Subjt:  RSSYESLEDIL

A0A5D3DPQ4 Sigma factor binding protein 21.88e-7687.5Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDR+LLVSELTTT  K  KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPAS CEI+ +D +EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.33e-3255.56Show/hide
Query:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQ

Query:  ELLIDSSC----DDDFLRSSYESLEDILRRDV-MENFGAISTSL
          L  ++     +DDFL S YES E++L R++ MENF   S S+
Subjt:  ELLIDSSC----DDDFLRSSYESLEDILRRDV-MENFGAISTSL

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic3.9e-0642.86Show/hide
Query:  MDRS---LLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MD+S   LL+++  ++        ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDRS---LLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

Q9LDH1 Sigma factor binding protein 1, chloroplastic9.2e-0849.32Show/hide
Query:  TTTMKKNTKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS
        TT++ K   +   RKS ++ K      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  SS
Subjt:  TTTMKKNTKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein2.8e-0742.86Show/hide
Query:  MDRS---LLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MD+S   LL+++  ++        ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDRS---LLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

AT3G56710.1 sigma factor binding protein 16.6e-0949.32Show/hide
Query:  TTTMKKNTKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS
        TT++ K   +   RKS ++ K      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  SS
Subjt:  TTTMKKNTKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACACGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAA
GTTGTATACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACT
AAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGAT
TCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTC
AATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
CTCTATTACAAAACAGCACTTATATTGTTCCATAATTTAGAAAAAATAATTTATTTTTATTCCTAAGTTTAGAACGTAACTAAAAATAAATAAAAAGATAAGACG
GTAACTTTTGAAATAATAGAGTATCAACGTACATAAATCAAACTTTTTTTTTCCTCCTGTCATTCCAAGAAGCCTCCTACTTATGATTTTGCAGCCACCAAACAC
TTTTCTTTCTCCCATAAATTAAACCCTCAAAAACTGCCTCTTCACGAACACGAACTCGAAATAATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATG
AAGAAGAACACGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGTATACATATCGAACCCGATGAGGGTTCACACAAGCGCA
TCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGAT
GATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGC
TTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAGTATAATGATTGAGGTTTTCATCTTTAT
TCTCTCAGCTTTCATTATAATTTAGCTATATATTTCAAGAGCCTGTCCAAAAATAAATGAAATGCACAATATTGTAATGTGTATCTTTAATTTACTCACTCTATC
ATAATCCATCTAACTTATAAAATTTAGGTTTAATTAATCTAATTAACCTCTTAGCTAACTTCATAATTTCTATGCCTAAATCATATCCCCTTGAACTTTGCTCTT
ATTTTAAGTATTTTTATTAATTTAAATTTCAAATTAACTAATTTAAACCAAGATATTTTGTTATTGTGTCATTTATTAACACCGTTCTATTATATTTCATTCAAA
AATCACTTTACACTCTAATTTCCTCTTACAATCATCCATACATTTACTCTAATTTATCATTTTATAAAATTAATATTTGAAGAAATATATACGTAATTAATAATT
CATGCATACATTATTTTCA
Protein sequenceShow/hide protein sequence
MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLID
SSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPLV