CuGenDBv2

Gene ID	CsGy3G035490
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	pentatricopeptide repeat-containing protein At2g35030, mitochondrial
Genome location	Gy14Chr3:33979741..33980040
RNA-Seq Expression	CsGy3G035490
Synteny	CsGy3G035490
Gene Ontology terms	NA
InterPro domains	IPR002885 - Pentatricopeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053865.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.85e-46

88.89

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQISVREIYTK TITTLLSSFGRYA VLCNLHNSI SSQFSTY+VV KIPSPVRDFST SN+ARSN LI KLGKEGKI EARKVFEEM DRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

XP_008443284.2 PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis melo]

4.01e-41

81.82

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MS+LYQISV EI  KHT TTLLSSFGRYA +LCNLHNSI SSQFST +VV KI SPVRDFS  SN+ARSNWLI KLGKEGKI EARKVFEEM DRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

XP_022935077.1 pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita moschata]

8.49e-36

70.71

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQ+ +REIY K T   LLS F RY  +LCN HNS  SS FSTY+VV KI S  RD+S  SN+AR+NWLI KLGKEGKIGEAR+VFEEMPDRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

XP_023527853.1 pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita pepo subsp. pepo]

2.22e-35

70.71

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQ+ +REIY K T    LS F RY  VLCN HNS  SS FSTY+VV KI S  RD+S  SN+AR+NWLI KLGKEGKIGEAR+VFEEMPDRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

XP_038906177.1 pentatricopeptide repeat-containing protein At2g35030, mitochondrial isoform X1 [Benincasa hispida]

7.42e-40

79.8

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQISVREIY K T   LLSSF RYA VLCNLHNSI SSQFST +VV KI S VRD+S  SN+AR+NWLI KLGKEGKIGEAR+VFEEMPDRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCG2 Uncharacterized protein

3.82e-42

81.82

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQISV EI  KH  TTLLSSFGRYA +LCNLHNSI SSQFST +VV KI SPVRDFS  SN+ARSNWLI +LGKEGKIGEAR+VFEEMPDRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

A0A0A0LHH2 Uncharacterized protein

9.23e-63

100

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

A0A1S3B8F2 pentatricopeptide repeat-containing protein At2g35030, mitochondrial

1.94e-41

81.82

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MS+LYQISV EI  KHT TTLLSSFGRYA +LCNLHNSI SSQFST +VV KI SPVRDFS  SN+ARSNWLI KLGKEGKI EARKVFEEM DRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

A0A5A7UH59 Pentatricopeptide repeat-containing protein

1.94e-41

81.82

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MS+LYQISV EI  KHT TTLLSSFGRYA +LCNLHNSI SSQFST +VV KI SPVRDFS  SN+ARSNWLI KLGKEGKI EARKVFEEM DRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

A0A5D3DPR9 Pentatricopeptide repeat-containing protein

8.95e-47

88.89

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Query:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        MSLLYQISVREIYTK TITTLLSSFGRYA VLCNLHNSI SSQFSTY+VV KIPSPVRDFST SN+ARSN LI KLGKEGKI EARKVFEEM DRDVVS
Subjt:  MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein

1.2e-04

42.03

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Query:  STYRVVSKIPSPVRDFST-ISNLARS-------------NWLIKKLGKEGKIGEARKVFEEMPDRDVVS
        S Y+  S  PS   D S  + NL RS              WLI +L K GKI EARK+F+ +P+RDVV+
Subjt:  STYRVVSKIPSPVRDFST-ISNLARS-------------NWLIKKLGKEGKIGEARKVFEEMPDRDVVS

Sequences

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CDS sequence

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ATGTCTTTACTATATCAGATATCAGTTAGAGAAATTTATACTAAACATACAATTACAACCCTTCTTTCTAGTTTTGGTAGATATGCGTTGGTGTTGTGCAATTTGCATAA
CTCCATCTCATCATCACAGTTTTCCACCTATCGGGTTGTTTCCAAAATCCCATCACCAGTTAGAGATTTCAGTACCATTTCAAATCTTGCTCGTAGTAACTGGTTGATTA
AAAAGCTTGGTAAAGAAGGAAAAATTGGAGAAGCACGTAAGGTTTTTGAGGAAATGCCTGATCGAGATGTGGTCTCATGA

mRNA sequence

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Protein sequence

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MSLLYQISVREIYTKHTITTLLSSFGRYALVLCNLHNSISSSQFSTYRVVSKIPSPVRDFSTISNLARSNWLIKKLGKEGKIGEARKVFEEMPDRDVVS

CsGy3G035490 (gene) of Cucumber (Gy14) v2.1 genome