; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy3G038200 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G038200
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCDT1 domain-containing protein
Genome locationGy14Chr3:35939161..35939880
RNA-Seq ExpressionCsGy3G038200
SyntenyCsGy3G038200
Gene Ontology termsGO:0000076 - DNA replication checkpoint (biological process)
GO:0000278 - mitotic cell cycle (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0071163 - DNA replication preinitiation complex assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0070182 - DNA polymerase binding (molecular function)
InterPro domainsIPR038090 - DNA replication factor Cdt1, C-terminal WH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043447.1 CDT1-like protein b [Cucumis melo var. makuwa]6.74e-6373.01Show/hide
Query:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD
        +PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SSMTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+D
Subjt:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD

Query:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS
        DILDV    LVQSI+EKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +I+ + 
Subjt:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS

XP_004151978.3 CDT1-like protein a, chloroplastic [Cucumis sativus]1.01e-7369.61Show/hide
Query:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSS I                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPTK      EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  RIIK
         ++K
Subjt:  RIIK

XP_008447443.1 PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo]3.03e-7078.57Show/hide
Query:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----
        SST P   IPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSMTPDDDF+YSTNKLVRRPP SRS+VFDTPTK +    
Subjt:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----

Query:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK
          DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +IK
Subjt:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK

XP_031737520.1 CDT1-like protein a, chloroplastic [Cucumis sativus]1.01e-7369.61Show/hide
Query:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSS I                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPTK      EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  RIIK
         ++K
Subjt:  RIIK

XP_038887484.1 CDT1-like protein b [Benincasa hispida]5.61e-6778.62Show/hide
Query:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD
        +PTT S MVGRV M KED QSAK +DIDSTP   VSTP RLM STPAMAPPK+SSMTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSLDD
Subjt:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD

Query:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRII
        DILDV    LVQSIREKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFL+HKR +I
Subjt:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRII

TrEMBL top hitse value%identityAlignment
A0A0A0L7I7 CDT1 domain-containing protein4.88e-7469.61Show/hide
Query:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSS I                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSSI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPTK      EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  RIIK
         ++K
Subjt:  RIIK

A0A1S3BGW9 CDT1-like protein a, chloroplastic1.47e-7078.57Show/hide
Query:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----
        SST P   IPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSMTPDDDF+YSTNKLVRRPP SRS+VFDTPTK +    
Subjt:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----

Query:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK
          DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +IK
Subjt:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK

A0A5A7T8X4 CDT1-like protein a1.47e-7078.57Show/hide
Query:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----
        SST P   IPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSMTPDDDF+YSTNKLVRRPP SRS+VFDTPTK +    
Subjt:  SSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGE----

Query:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK
          DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +IK
Subjt:  -IDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIK

A0A5A7TNU2 CDT1-like protein b3.26e-6373.01Show/hide
Query:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD
        +PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SSMTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+D
Subjt:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD

Query:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS
        DILDV    LVQSI+EKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +I+ + 
Subjt:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS

A0A5D3DKW1 CDT1-like protein b4.57e-6372.39Show/hide
Query:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD
        +PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SSMTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+D
Subjt:  IPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDD

Query:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS
        DILDV    LVQSI+EKER +KEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHKR +I+ + 
Subjt:  DILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRS

SwissProt top hitse value%identityAlignment
Q9SJW9 CDT1-like protein a, chloroplastic1.2e-1243.97Show/hide
Query:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE
        I +TP  F STP RLM ++ A  P K+S+    PDD  +    KLVRR         P   R++ F  D P     E DVS DD+IL +    L  +I+E
Subjt:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE

Query:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRR
        +ER   E+Q PAI+ AKRR+KMIA LPKLFN I +L    R
Subjt:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRR

Arabidopsis top hitse value%identityAlignment
AT2G31270.1 homolog of yeast CDT1 A8.2e-1443.97Show/hide
Query:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE
        I +TP  F STP RLM ++ A  P K+S+    PDD  +    KLVRR         P   R++ F  D P     E DVS DD+IL +    L  +I+E
Subjt:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE

Query:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRR
        +ER   E+Q PAI+ AKRR+KMIA LPKLFN I +L    R
Subjt:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATATTGACGCTGAAACTTCTGATGAGTCTTCAACTAAACCTTCCTCCTCAATTCCCACAACTCGCAGTACTATGGTAGGAAGAGTAAACATGAGGAAAGAAGA
TGGTCAATCTGCGAAAGCTAATGATATTGATTCAACTCCTACAATGTTTGTTTCAACCCCGGATCGGCTGATGCCTAGCACACCTGCAATGGCTCCACCAAAACAAAGTT
CCATGACTCCAGATGATGATTTTTCCTACTCAACAAACAAATTAGTCAGACGTCCACCTTGTTCGAGATCAATTGTATTTGACACTCCCACAAAGGGCGAGATAGACGTT
TCACTCGACGATGACATTCTAGATGTTCACCTCGTGCAATCCATTAGAGAGAAAGAAAGACCGATCAAAGAAGAGCAAATGCCAGCAATAACACAAGCTAAGAGACGACA
GAAAATGATTGCTGAACTGCCAAAACTCTTCAATGCTATCTTCTTTTTGTACCACAAGCGTAGAATTATTAAAGGGAGGAGCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATATTGACGCTGAAACTTCTGATGAGTCTTCAACTAAACCTTCCTCCTCAATTCCCACAACTCGCAGTACTATGGTAGGAAGAGTAAACATGAGGAAAGAAGA
TGGTCAATCTGCGAAAGCTAATGATATTGATTCAACTCCTACAATGTTTGTTTCAACCCCGGATCGGCTGATGCCTAGCACACCTGCAATGGCTCCACCAAAACAAAGTT
CCATGACTCCAGATGATGATTTTTCCTACTCAACAAACAAATTAGTCAGACGTCCACCTTGTTCGAGATCAATTGTATTTGACACTCCCACAAAGGGCGAGATAGACGTT
TCACTCGACGATGACATTCTAGATGTTCACCTCGTGCAATCCATTAGAGAGAAAGAAAGACCGATCAAAGAAGAGCAAATGCCAGCAATAACACAAGCTAAGAGACGACA
GAAAATGATTGCTGAACTGCCAAAACTCTTCAATGCTATCTTCTTTTTGTACCACAAGCGTAGAATTATTAAAGGGAGGAGCTATTAA
Protein sequenceShow/hide protein sequence
MANIDAETSDESSTKPSSSIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGEIDV
SLDDDILDVHLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRRIIKGRSY