CuGenDBv2

Gene ID	CsGy3G041630
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Gy14Chr3:38875703..38878115
RNA-Seq Expression	CsGy3G041630
Synteny	CsGy3G041630
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.30e-149

100

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

8.76e-148

98.53

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

2.14e-139

93.14

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

3.54e-138

92.65

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.12e-145

98.04

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSM SRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

6.27e-150

100

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

4.24e-148

98.53

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

4.24e-148

98.53

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

1.03e-139

93.14

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

1.72e-138

92.65

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

2.5e-78

68.69

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Query:  LSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRR
        L + PSS+S   N K  +   +   ++ N    +S++VPDFL ADW ++ +K P GPRL F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  R
Subjt:  LSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRR

Query:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        STYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSLFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCCTTATCCGCGGCTCCTTCATCTATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTCTGATTGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGACTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCTCTGAGATACAATGATCGTCCCCACCAAGATTATGGAATTGAAGTCATGTACCAGTTTGCAGGGTTCGATCCTCTTCGAAGGTCAACATATTTT
GGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGGGGCTCGTGGGATG
GGTATTGGCTTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTATTAA

mRNA sequence

Show/hide mRNA sequence

CAACGGACTAAAGTGGTAATTTGACACAAATCCAAATAAAATGGTAACTGAACAAGAACAGATCAAATCGACGCTTCACTTCCGAAACGCTAATCAATCGTCAATCATCG
ATTTCATCAGAAGCGGAAGAAGAAGAAGAAGAAGAAGTAGTAGGTTCTGTAGGGTAAGATTCTCCTCGGGTGGAAGAGGATGTCATGTTGTTCGTCCTTATCCGCGGCTC
CTTCATCTATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTCTGATTGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTT
CTTCCTGCTGACTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCTCTGAGATACAATGA
TCGTCCCCACCAAGATTATGGAATTGAAGTCATGTACCAGTTTGCAGGGTTCGATCCTCTTCGAAGGTCAACATATTTTGGTCCCTTCTTTGATTTGGGACAGTTTGAAA
GATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGGGTA
TGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGGGGCTCGTGGGATGGGTATTGGCTTACAGAGAGTTTACTAAACGA
TGGGGATGCATTTAGTGGAGGCTTAGCTTATTAAGGAAAAGGACGTGGTGCCACAATTGGTTGGCTGGTTAGCAACCTTAGCACGGTATTGTTCCTTGTATATCTGAAAT
GTATATCATACGTCTTTGTTGTTGGGAACTCTTGTACGATTCTATAGAATTTGTATATATTTTTTTCATG

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

CsGy3G041630 (gene) of Cucumber (Gy14) v2.1 genome