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CsGy3G042700 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G042700
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionSeryl-tRNA synthetase
Genome locationGy14Chr3:39712228..39713031
RNA-Seq ExpressionCsGy3G042700
SyntenyCsGy3G042700
Gene Ontology termsGO:0048481 - plant ovule development (biological process)
GO:0070158 - mitochondrial seryl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0004828 - serine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002317 - Serine-tRNA ligase, type1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038695.1 serine--tRNA ligase [Cucumis melo var. makuwa]3.85e-6690.83Show/hide
Query:  MGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRK
        MGFQTLKL  FPASSTSRLM LPPTKTPSLT  HPCVRTHRPPSRL VRAFSLPSV+ DHPP+TIAGEEKVVKPQWKASIDFKWIRDNKDLVASNI NRK
Subjt:  MGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRK

Query:  SGANLELVLQLYDKMLNLQK
        SGANLELVLQLYD+MLNLQK
Subjt:  SGANLELVLQLYDKMLNLQK

KAG6608257.1 Serine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]9.45e-5567.53Show/hide
Query:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA
        I+  R AIR+FH+FPPS +F +A TMGF         QTLKL AFP  +TSRL+   PTKT SL SLHPC R  +PP  LLVRA S  +V+ D PP+  A
Subjt:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA

Query:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
        GEE V KPQWKASIDFKWIRDNKDLVA+NI+NRKSGANLELVLQLYDKMLNLQK
Subjt:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK

KAG7037606.1 Serine--tRNA ligase, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]7.86e-5567.1Show/hide
Query:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA
        I+  R AIR+FH+FPPS +F +A TMGF         QTLKL AFP  +TSRL+   PTKT SL SLHPC R  +PP  LLVRA S  +V+ D PP+  A
Subjt:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA

Query:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQKI
        GEE V KPQWKASIDFKWIRDNKDLVA+NI+NRKSGANLELVLQLYDKMLNLQK+
Subjt:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQKI

XP_004136430.2 serine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]1.46e-97100Show/hide
Query:  MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV
        MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV
Subjt:  MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV

Query:  VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
        VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
Subjt:  VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK

XP_008466212.1 PREDICTED: serine--tRNA ligase, chloroplastic/mitochondrial [Cucumis melo]2.05e-6991.2Show/hide
Query:  PKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASN
        PKASTMGFQTLKL  FPASSTSRLM LPPTKTPSLT  HPCVRTHRPPSRL VRAFSLPSV+ DHPP+TIAGEEKVVKPQWKASIDFKWIRDNKDLVASN
Subjt:  PKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASN

Query:  IQNRKSGANLELVLQLYDKMLNLQK
        I NRKSGANLELVLQLYD+MLNLQK
Subjt:  IQNRKSGANLELVLQLYDKMLNLQK

TrEMBL top hitse value%identityAlignment
A0A0A0LHK3 Seryl-tRNA synthetase7.07e-98100Show/hide
Query:  MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV
        MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV
Subjt:  MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKV

Query:  VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
        VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
Subjt:  VKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK

A0A1S3CQP4 Seryl-tRNA synthetase9.94e-7091.2Show/hide
Query:  PKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASN
        PKASTMGFQTLKL  FPASSTSRLM LPPTKTPSLT  HPCVRTHRPPSRL VRAFSLPSV+ DHPP+TIAGEEKVVKPQWKASIDFKWIRDNKDLVASN
Subjt:  PKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASN

Query:  IQNRKSGANLELVLQLYDKMLNLQK
        I NRKSGANLELVLQLYD+MLNLQK
Subjt:  IQNRKSGANLELVLQLYDKMLNLQK

A0A5A7TBE3 Seryl-tRNA synthetase1.86e-6690.83Show/hide
Query:  MGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRK
        MGFQTLKL  FPASSTSRLM LPPTKTPSLT  HPCVRTHRPPSRL VRAFSLPSV+ DHPP+TIAGEEKVVKPQWKASIDFKWIRDNKDLVASNI NRK
Subjt:  MGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRK

Query:  SGANLELVLQLYDKMLNLQK
        SGANLELVLQLYD+MLNLQK
Subjt:  SGANLELVLQLYDKMLNLQK

A0A6J1FJG1 Seryl-tRNA synthetase1.26e-5467.53Show/hide
Query:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA
        I+  R AIR+FH+FPPS +F +A TMGF         QTLKL AFP  +TSRL+   PTKT SL SLHPC R  +PP  LLVRA S  +V+ D PP+  A
Subjt:  IMGERGAIRHFHSFPPSHTFPKASTMGF---------QTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIA

Query:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK
        GEE V KPQWKASIDFKWIRDNKDLVA+NI+NRKSGANLELVLQLYDKMLNLQK
Subjt:  GEEKVVKPQWKASIDFKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQK

A0A6J1J1Q0 Seryl-tRNA synthetase3.97e-4269.67Show/hide
Query:  STMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQN
        S    QTLKL A P  +TS L+   PTK  SL SLHPC R  +PP  LLVRA S  +V+ D PP+  AGEE V KPQWKASIDFKWIRDNKDLVA+NI+N
Subjt:  STMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQN

Query:  RKSGANLELVLQLYDKMLNLQK
        RKSGANLELVLQLYDKMLNLQK
Subjt:  RKSGANLELVLQLYDKMLNLQK

SwissProt top hitse value%identityAlignment
Q8RWT8 Serine--tRNA ligase, chloroplastic/mitochondrial9.5e-1947.11Show/hide
Query:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR
        MG   L+L  A P + +SRL + P T T +L      ++    P  LLVRAFS  +   D P +  +      +P WKA+IDFKWIRDNK+ V  NI+NR
Subjt:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR

Query:  KSGANLELVLQLYDKMLNLQK
         S ANLE VLQLY+ M+NLQK
Subjt:  KSGANLELVLQLYDKMLNLQK

Arabidopsis top hitse value%identityAlignment
AT1G11870.1 Seryl-tRNA synthetase1.3e-1847.11Show/hide
Query:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR
        MG   L+L  A P + +SRL + P T T +L      ++    P  LLVRAFS  +   D P +  +  +   +P WKA+IDFKWIRDNK+ V  NI+NR
Subjt:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR

Query:  KSGANLELVLQLYDKMLNLQK
         S ANLE VLQLY+ M+NLQK
Subjt:  KSGANLELVLQLYDKMLNLQK

AT1G11870.2 Seryl-tRNA synthetase6.7e-2047.11Show/hide
Query:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR
        MG   L+L  A P + +SRL + P T T +L      ++    P  LLVRAFS  +   D P +  +      +P WKA+IDFKWIRDNK+ V  NI+NR
Subjt:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR

Query:  KSGANLELVLQLYDKMLNLQK
         S ANLE VLQLY+ M+NLQK
Subjt:  KSGANLELVLQLYDKMLNLQK

AT1G11870.3 Seryl-tRNA synthetase6.7e-2047.11Show/hide
Query:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR
        MG   L+L  A P + +SRL + P T T +L      ++    P  LLVRAFS  +   D P +  +      +P WKA+IDFKWIRDNK+ V  NI+NR
Subjt:  MGFQTLKL-PAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASIDFKWIRDNKDLVASNIQNR

Query:  KSGANLELVLQLYDKMLNLQK
         S ANLE VLQLY+ M+NLQK
Subjt:  KSGANLELVLQLYDKMLNLQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATAATGATAATGGGGGAAAGGGGTGCCATCCGCCATTTCCATTCCTTCCCGCCAAGCCATACCTTCCCCAAAGCTTCAACAATGGGATTCCAAACCCTTAAGCT
ACCTGCCTTTCCAGCCTCTTCCACTTCCCGTCTAATGGTACTGCCTCCCACTAAAACCCCTTCTCTTACTTCTCTTCATCCTTGTGTCCGTACCCACAGACCTCCATCTC
GATTACTCGTTCGGGCTTTCTCATTGCCGTCCGTCGAATTCGACCACCCTCCCTCTACAATCGCCGGAGAAGAAAAGGTTGTGAAACCTCAATGGAAAGCTTCAATAGAC
TTCAAGTGGATTAGGGATAACAAGGATTTGGTGGCTTCAAATATACAGAATCGGAAATCTGGTGCTAATTTGGAACTTGTGCTTCAGCTTTATGACAAAATGTTAAATCT
TCAGAAGATTCCAGGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAATGATAATGGGGGAAAGGGGTGCCATCCGCCATTTCCATTCCTTCCCGCCAAGCCATACCTTCCCCAAAGCTTCAACAATGGGATTCCAAACCCTTAAGCT
ACCTGCCTTTCCAGCCTCTTCCACTTCCCGTCTAATGGTACTGCCTCCCACTAAAACCCCTTCTCTTACTTCTCTTCATCCTTGTGTCCGTACCCACAGACCTCCATCTC
GATTACTCGTTCGGGCTTTCTCATTGCCGTCCGTCGAATTCGACCACCCTCCCTCTACAATCGCCGGAGAAGAAAAGGTTGTGAAACCTCAATGGAAAGCTTCAATAGAC
TTCAAGTGGATTAGGGATAACAAGGATTTGGTGGCTTCAAATATACAGAATCGGAAATCTGGTGCTAATTTGGAACTTGTGCTTCAGCTTTATGACAAAATGTTAAATCT
TCAGAAGATTCCAGGAAGTTGA
Protein sequenceShow/hide protein sequence
MKIMIMGERGAIRHFHSFPPSHTFPKASTMGFQTLKLPAFPASSTSRLMVLPPTKTPSLTSLHPCVRTHRPPSRLLVRAFSLPSVEFDHPPSTIAGEEKVVKPQWKASID
FKWIRDNKDLVASNIQNRKSGANLELVLQLYDKMLNLQKIPGS