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CsGy3G043097 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G043097
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationGy14Chr3:40064101..40065028
RNA-Seq ExpressionCsGy3G043097
SyntenyCsGy3G043097
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038659.1 uncharacterized protein E6C27_scaffold92G001940 [Cucumis melo var. makuwa]6.57e-6275.69Show/hide
Query:  WGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDR--IYKFLTSLNVEFDEVKGRILGKTFL
        W +   M       S VFELNLK GDI QGGNS+TQYLHSLKRIWQD+D   SYKWKSANDQKHYRKIVED    IYKFL SLNVEFDEV+GRILG T L
Subjt:  WGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDR--IYKFLTSLNVEFDEVKGRILGKTFL

Query:  PSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKAS
        PSINDV SDVY E++CKNVMIGKKPIDLVESS LV EQTAMK S
Subjt:  PSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKAS

RVW57725.1 hypothetical protein CK203_111689 [Vitis vinifera]8.99e-5656.36Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++LW +V QMYSDLGNQSQ+FEL LKLG+I QG ++VT+Y +SLKRIWQDLD   +Y+WKSA D  H++K +ED+RI+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV
         +G+  LPSI +V+S+V +EE+ +NVM+GKK P   +E S LV       KA++   K+ E+PR+
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV

RVW72934.1 hypothetical protein CK203_053082 [Vitis vinifera]1.26e-5556.97Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++ W +V QMYSDLGNQSQ+FEL LKLG+I QG ++VT+Y +SLKRIWQDLD   +Y+WKSA D  H++K +ED+RI+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV
        I+G+  LPSI +V S+V +EE+ +NVM+GKK P   +E S LV       KA++  +K+ E+PRV
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV

XP_010651624.1 PREDICTED: uncharacterized protein LOC104879667 [Vitis vinifera]4.77e-5555.76Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY TT++LW +V QMYSDLGNQSQ+FEL LKLG+I QG ++VT+Y +SLKRIWQDLD   +Y+WKS  D  H++K +ED++I+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPIDL-VESSTLVIEQTAM-KASSHSKKTHEKPRV
        I+G+  LPSI +V S+V +EE+ +NVM+GKK + + +E   LV       K ++  +K+ EKPRV
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPIDL-VESSTLVIEQTAM-KASSHSKKTHEKPRV

XP_028105813.1 uncharacterized protein LOC114304864 [Camellia sinensis]3.35e-5554.88Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++LW +V+QMYSDLGNQSQVFEL LKL +I QG +SVT+Y +SLKR+WQDLD   +Y+WKS +D  H++K VED RIYKFL  LN+EFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPID-LVESSTLVIEQTAMKASSHSKKTHEKPRV
        I+G+  LPSI +V ++V +E++  +VM+ KK  D  +E S+L+ +  A KA+++  +  +KPRV
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPID-LVESSTLVIEQTAMKASSHSKKTHEKPRV

TrEMBL top hitse value%identityAlignment
A0A1S8ABR1 Uncharacterized protein (Fragment)4.89e-5757.67Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++LW +V QMYSDLGNQSQ+FEL LKLG++ QG ++VT+Y +SLKRIWQDLD   +Y+WKS  D +H++K VED RI+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKASSHSKKTHEKPRV
        I+G+  LPSI DV S+V +EE+ +NVM+GKK   + E S LV   T  KA    +K+ EK +V
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKASSHSKKTHEKPRV

A0A2N9G446 Uncharacterized protein8.96e-6058.18Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++LW +V QMYSDLGNQSQ+FEL LKLG++ QG +SVT+Y +SLKR+WQDLD   +Y+WKS  D +H++KIVED+RI+KFL  LN+EFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVI-EQTAMKASSHSKKTHEKPRV
        ++G+  LPSI DV S+V +EE+ +NVM+GKK P   VESS LV  +  + KA ++ ++T +KPRV
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVI-EQTAMKASSHSKKTHEKPRV

A0A438FCK3 Uncharacterized protein4.35e-5656.36Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++LW +V QMYSDLGNQSQ+FEL LKLG+I QG ++VT+Y +SLKRIWQDLD   +Y+WKSA D  H++K +ED+RI+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV
         +G+  LPSI +V+S+V +EE+ +NVM+GKK P   +E S LV       KA++   K+ E+PR+
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV

A0A438GL90 Uncharacterized protein6.09e-5656.97Show/hide
Query:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR
        MCY T ++ W +V QMYSDLGNQSQ+FEL LKLG+I QG ++VT+Y +SLKRIWQDLD   +Y+WKSA D  H++K +ED+RI+KFL  LNVEFDEV+GR
Subjt:  MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGR

Query:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV
        I+G+  LPSI +V S+V +EE+ +NVM+GKK P   +E S LV       KA++  +K+ E+PRV
Subjt:  ILGKTFLPSINDVVSDVYKEENCKNVMIGKK-PIDLVESSTLVIEQTAM-KASSHSKKTHEKPRV

A0A5A7TBD5 Reverse transcriptase Ty1/copia-type domain-containing protein3.18e-6275.69Show/hide
Query:  WGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDR--IYKFLTSLNVEFDEVKGRILGKTFL
        W +   M       S VFELNLK GDI QGGNS+TQYLHSLKRIWQD+D   SYKWKSANDQKHYRKIVED    IYKFL SLNVEFDEV+GRILG T L
Subjt:  WGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLD---SYKWKSANDQKHYRKIVEDDR--IYKFLTSLNVEFDEVKGRILGKTFL

Query:  PSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKAS
        PSINDV SDVY E++CKNVMIGKKPIDLVESS LV EQTAMK S
Subjt:  PSINDVVSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.1e-0424.8Show/hide
Query:  TTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLDSY------KWKSANDQ--KHYRKIVEDDRIYKFL--TSLNVEFDEV
        T  K+W  + +++    +  ++++L  +L  + QGG+SV +Y   L ++W +L  Y      K    N +  K   +  E ++ Y+FL    LN  F+ V
Subjt:  TTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLDSY------KWKSANDQ--KHYRKIVEDDRIYKFL--TSLNVEFDEV

Query:  KGRILGKTFLPSINDVVSDVYKEEN
          +I+ +   PS+++  + V   E+
Subjt:  KGRILGKTFLPSINDVVSDVYKEEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTACACTACAACAAAAAAATTGTGGGGTAGTGTGACACAGATGTACTCTGATTTAGGCAATCAATCACAAGTATTTGAGTTGAATCTCAAATTAGGAGATATACA
CCAAGGAGGTAACTCCGTGACACAATACCTTCATTCCCTAAAAAGGATTTGGCAAGACCTCGATTCATACAAGTGGAAGTCTGCAAATGATCAAAAACACTACAGGAAAA
TTGTAGAAGACGATCGTATTTACAAGTTTCTTACTAGCCTCAATGTTGAATTTGATGAGGTCAAAGGTCGAATACTAGGAAAAACCTTTCTTCCATCTATTAATGATGTG
GTTTCTGATGTTTACAAGGAAGAAAACTGCAAGAATGTTATGATTGGAAAAAAGCCTATTGATTTAGTGGAAAGTTCTACATTGGTGATCGAACAAACAGCCATGAAGGC
CTCTAGTCACTCCAAAAAGACACATGAAAAGCCTCGAGTCTAG
mRNA sequenceShow/hide mRNA sequence
CTCGCTATCCAAATAACCACGATCCGACTTAATGGAGACAACTTTCTTCATTGGTTACGAAGTGTTAGGTTGTATATTCGTGGACAAGGGACAATTAGCTACATTACCAG
AGAGAAAACTGTTCAAAAACTAGACAATCCTTTTTTCGCTACATGGAATGATGAAAACTCCATGGTTATGACTTGGGTTGTAAACTCCATGGTTGAAGACATCAATTGAA
ATTACATGTGCTACACTACAACAAAAAAATTGTGGGGTAGTGTGACACAGATGTACTCTGATTTAGGCAATCAATCACAAGTATTTGAGTTGAATCTCAAATTAGGAGAT
ATACACCAAGGAGGTAACTCCGTGACACAATACCTTCATTCCCTAAAAAGGATTTGGCAAGACCTCGATTCATACAAGTGGAAGTCTGCAAATGATCAAAAACACTACAG
GAAAATTGTAGAAGACGATCGTATTTACAAGTTTCTTACTAGCCTCAATGTTGAATTTGATGAGGTCAAAGGTCGAATACTAGGAAAAACCTTTCTTCCATCTATTAATG
ATGTGGTTTCTGATGTTTACAAGGAAGAAAACTGCAAGAATGTTATGATTGGAAAAAAGCCTATTGATTTAGTGGAAAGTTCTACATTGGTGATCGAACAAACAGCCATG
AAGGCCTCTAGTCACTCCAAAAAGACACATGAAAAGCCTCGAGTCTAGTGTGACCATTGCAACAAACCTCGACATACACGTGAAACTTGTTGAAAGCTTCATGGAAAACC
TGCGAATTGGAAAAGTTCTAAGTAAGGGGAGAGAAATTCCCTTCTACACACCTTAAATGCAAATGCTGGTGATTCCAACCTCTTTAGCAAGGCGCAAATTGATCAAATCC
TGAAACTGCTAAAGACTACTTCATCATCAGGTAATCCTAGTGTCTCCT
Protein sequenceShow/hide protein sequence
MCYTTTKKLWGSVTQMYSDLGNQSQVFELNLKLGDIHQGGNSVTQYLHSLKRIWQDLDSYKWKSANDQKHYRKIVEDDRIYKFLTSLNVEFDEVKGRILGKTFLPSINDV
VSDVYKEENCKNVMIGKKPIDLVESSTLVIEQTAMKASSHSKKTHEKPRV