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CsGy3G043400 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G043400
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein 6, chloroplastic
Genome locationGy14Chr3:40354591..40355116
RNA-Seq ExpressionCsGy3G043400
SyntenyCsGy3G043400
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466097.1 PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo]2.72e-6394.34Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
        MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQ
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ

Query:  APVTSE
        AP+TSE
Subjt:  APVTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]2.93e-67100Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
        MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ

Query:  APVTSE
        APVTSE
Subjt:  APVTSE

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]3.40e-5585.05Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA
        MSIST+ G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VE+AS I+SSA
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA

Query:  QAPVTSE
        QAP T+E
Subjt:  QAPVTSE

XP_022975752.1 50S ribosomal protein 6, chloroplastic [Cucurbita maxima]1.19e-5585.98Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA
        MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSA
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA

Query:  QAPVTSE
        QAP T+E
Subjt:  QAPVTSE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]5.87e-5685.98Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA
        MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSA
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA

Query:  QAPVTSE
        QAP T+E
Subjt:  QAPVTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.42e-67100Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
        MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ

Query:  APVTSE
        APVTSE
Subjt:  APVTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic1.32e-6394.34Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
        MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQ
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ

Query:  APVTSE
        AP+TSE
Subjt:  APVTSE

A0A5A7TB88 50S ribosomal protein 61.32e-6394.34Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ
        MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQ
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ

Query:  APVTSE
        AP+TSE
Subjt:  APVTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.65e-5585.05Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA
        MSIST+ G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VE+AS I+SSA
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA

Query:  QAPVTSE
        QAP T+E
Subjt:  QAPVTSE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic5.74e-5685.98Show/hide
Query:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA
        MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSA
Subjt:  MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSA

Query:  QAPVTSE
        QAP T+E
Subjt:  QAPVTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic3.3e-1859.04Show/hide
Query:  SISTFLGCKISVPP---LLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV
        S+S+  GC +S+ P   L N +       + G LLIECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLPPLPPD+T+V
Subjt:  SISTFLGCKISVPP---LLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV

P82411 50S ribosomal protein 6, chloroplastic3.5e-2046.85Show/hide
Query:  MSISTFLGCK-ISVPPLLNSSA----------SKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN
        MS+S   G + +++P +L +S+          S    C  G + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLPPLP +WT+VSS   + +
Subjt:  MSISTFLGCK-ISVPPLLNSSA----------SKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN

Query:  VEIASISSSAQ
           ++ SSSA+
Subjt:  VEIASISSSAQ

Q9FKP0 50S ribosomal protein 6, chloroplastic1.8e-1647.96Show/hide
Query:  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS
        MS+S   G  I    + P L      K        ++IECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 61.3e-1747.96Show/hide
Query:  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS
        MS+S   G  I    + P L      K        ++IECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCCACATTTTTGGGCTGTAAGATTTCGGTTCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGCCGGAAATTTGCTGATTGAATGCTC
GTCGAGGCCCAACAAGAAGGCGACAGCACATCACATGAAAACAAGGCCACGGAAATCCCAGCCATGGGACATTCGTCGTAAGCCGACTGTGTATCCTCCTCTGCCGCCTC
TTCCACCAGACTGGACCTTGGTTTCATCCGTCTCCGGCGATGAAAACGTCGAGATAGCTTCGATTTCTTCGTCTGCTCAAGCACCGGTTACTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
CGAAGATAACGAATGTAATCCCATTTGATCGGTTTGTATTTGCCTTTCTGACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACATTTTTGGGCTGTAAGATTTCGGT
TCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGCCGGAAATTTGCTGATTGAATGCTCGTCGAGGCCCAACAAGAAGGCGACAGCACATCACATGA
AAACAAGGCCACGGAAATCCCAGCCATGGGACATTCGTCGTAAGCCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCAGACTGGACCTTGGTTTCATCCGTCTCCGGC
GATGAAAACGTCGAGATAGCTTCGATTTCTTCGTCTGCTCAAGCACCGGTTACTAGCGAGTAACACTAGTAATTCTTCTCTTTTTTCTTTTGTTTTTCCTGTATTATCAT
TTGTATCATCGACATTTTGATTGAACTTTTATTGAGACAATTGTGTGGTTTTTCAATCTCTATTTTTGTTAATTATGGTATCTGGA
Protein sequenceShow/hide protein sequence
MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE