CuGenDBv2

Gene ID	CsGy3G043460
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	Gy14Chr3:40372559..40375754
RNA-Seq Expression	CsGy3G043460
Synteny	CsGy3G043460
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136231.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus]

1.59e-94

100

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

7.27e-91

95.17

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

3.91e-75

82.31

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI   F  H+LP+S+  IR  ST   I ASLQPPDVPRLA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGG+QRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

2.12e-74

82.07

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IR  STA GI ASLQPPDVPRLA+TARISL P++ EEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QR+D+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

1.19e-80

88.28

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASS PSLK +IFIST  HSLP S I IR  STAS I ASLQPPDVPRLA+TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEP+
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

7.70e-95

100

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.52e-91

95.17

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.52e-91

95.17

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.89e-75

82.31

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI   F  H+LP+S+  IR  ST   I ASLQPPDVPRLA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGG+QRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.02e-74

82.07

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IR  STA GI ASLQPPDVPRLA+TARISL P + EEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QR+D+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

6.4e-33

66.04

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Query:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADT-EGGSQRNDIPETFENREAMIGAVPVFDEPYIKVP
        ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  G S R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADT-EGGSQRNDIPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

5.2e-35

57.93

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS+A+ LLKG S  P     +F+       P  +I  R ++ A+   +SL+PPDV RLA+TARISLTP Q EEF PKI QV+DW   L +VDL S+EPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG + R+D PETFENREA+I AVP +++PY+KVPKVLNKE
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.6e-36

58.22

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEP
        MGS+AL LLK A     LK QI         P S  ++ R  S  +   +SLQPPDV RLA+TARISL   + EEFAPKI QV+DWFGQLQ VDL S+EP
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEP

Query:  SIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        +IRAD+EG + R+D+PETF  REA+I AVP +++PY+KVPKVLNKE
Subjt:  SIRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.1e-40

60.69

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS+AL LLK  ++    +  +F S +      S   IRNS+ +    ++L PPD+PRLA+TARISLTP + EEFAPKI QV+DWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG + R+D PETFENREA+I A+P ++EPY+KVPKVLNK+
Subjt:  IRADTEGGSQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

6.4e-33

66.04

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Query:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADT-EGGSQRNDIPETFENREAMIGAVPVFDEPYIKVP
        ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  G S R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADT-EGGSQRNDIPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.1e-31

56.76

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Query:  NISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEP
        N  I  S ++   S+ LQPPDV RLAQTARISLTP + EE   KI +V+DWFGQLQ VD+ S+EP+IRA+ +GG+ R D PETF+NR+++  ++P F++ 
Subjt:  NISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFENREAMIGAVPVFDEP

Query:  YIKVPKVLNKE
        Y+KVPK+LNKE
Subjt:  YIKVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCACTCCCTTCCTGTTTCCAACATCTC
AATCCGAAATTCTTCGACTGCTTCAGGAATTTCAGCTTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTCAAACAGCTCGAATTTCTCTCACTCCCACTCAGGCTGAAG
AATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGGTGGCAGTCAG
CGGAACGACATTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

mRNA sequence

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Protein sequence

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MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQ
RNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

CsGy3G043460 (gene) of Cucumber (Gy14) v2.1 genome