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CsGy4G000070 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G000070
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationGy14Chr4:57729..58024
RNA-Seq ExpressionCsGy4G000070
SyntenyCsGy4G000070
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031676 - plasma membrane-derived thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABK55741.1 chloroplast photosystem II CP47 protein, partial [Cucumis sativus]4.18e-4390Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
KAF9621399.1 hypothetical protein IFM89_020921 [Coptis chinensis]1.27e-4188.57Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
OTF84529.1 putative photosystem antenna protein-like protein [Helianthus annuus]1.75e-4281.01Show/hide
Query:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        +LD M R  IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFL+GL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
VAI53276.1 unnamed protein product [Triticum turgidum subsp. durum]1.13e-4178.48Show/hide
Query:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        +LD M R  IWHWVYWDLEIFS+ERTGKPSLD PKIFGIHLFL+G+ CFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
WP_201336743.1 hypothetical protein, partial [Salinicoccus roseus]5.16e-4287.14Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
TrEMBL top hitse value%identityAlignment
A0A1B0YPL1 Photosystem II CP47 chlorophyll apoprotein1.18e-4188.57Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
A0A1Y3BU64 Putative photosystem antenna protein-like protein8.48e-4381.01Show/hide
Query:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        +LD M R  IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFL+GL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
A0A446VZF2 Uncharacterized protein5.46e-4278.48Show/hide
Query:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        +LD M R  IWHWVYWDLEIFS+ERTGKPSLD PKIFGIHLFL+G+ CFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
A1BQP0 Chloroplast photosystem II CP47 protein (Fragment)2.03e-4390Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
T1NKI2 Uncharacterized protein7.98e-4293.75Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLS
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFL+G+ CFGFGAFHVTGLYGPGIWVSDPYGL+
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLS
SwissProt top hitse value%identityAlignment
A4QL45 Photosystem II CP47 reaction center protein5.6e-3487.14Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGL+    T+
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
A6MMN3 Photosystem II CP47 reaction center protein5.6e-3488.57Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGL+    +I
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
A8SEC9 Photosystem II CP47 reaction center protein7.3e-3487.14Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
Q06FP2 Photosystem II CP47 reaction center protein5.6e-3487.14Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGL+    ++
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
Q2QD63 Photosystem II CP47 reaction center protein6.6e-3590Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B2.0e-3485.71Show/hide
Query:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI
        IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDPYGL+     +
Subjt:  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGACGCCATGAGTAGAGTACCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTCTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAG
ATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGTTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTAT
GGATTAAGTTCAAGTACCGCAACAATTTTCTTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGACGCCATGAGTAGAGTACCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTCTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAG
ATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGTTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTAT
GGATTAAGTTCAAGTACCGCAACAATTTTCTTATATTGA
Protein sequenceShow/hide protein sequence
MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATIFLY