CuGenDBv2

Gene ID	CsGy4G000480
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Zinc finger SWIM domain-containing protein
Genome location	Gy14Chr4:283719..286131
RNA-Seq Expression	CsGy4G000480
Synteny	CsGy4G000480
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152266.1 zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus]

3.09e-88

100

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_008454376.1 PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]

4.22e-86

97.73

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

7.86e-82

93.94

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

1.12e-81

93.18

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_038903696.1 zinc finger SWIM domain-containing protein 7 [Benincasa hispida]

5.76e-84

95.45

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISG PSTRSIFQV+GESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA S+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

1.49e-88

100

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

2.04e-86

97.73

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

4.99e-78

89.39

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQI+STR VTDDQLS+LHFLFGKNFERATRIVDQRGVKKI G PS RSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GA IE KVSDEELA+LLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

3.81e-82

93.94

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

5.41e-82

93.18

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

4.6e-49

66.67

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA+S+G   E++VSD+ LA++LS +
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

AT4G33925.2 unknown protein

1.2e-44

68.07

Show/hide

Query:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA+S+G   E++
Subjt:  KHQLAARLAASVGACIEVK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTT
CGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGT
ATCTTTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCT
TCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

mRNA sequence

Show/hide mRNA sequence

GTAAATTATTTTGAATAATTTGATGAAAGATTTGAAAAAGATACAAAATTTAAGAAATGGGTATGTGAAAAAGGAAAAAAAATTGTTGTTAATTGGGAGAAAGAAGAAGA
ATTTGGGTGGGAATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTT
TGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAA
GGAAAGAGGAGTATCTTTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCA
AGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAAAAGCCTGCAATGATTTTATCTAAGCCAAC
ACTCTCAGTGCTCGAAGTTTCAGAGGTAATCAAACCACATAATTGTATGAACAGCAACCTTTTCCGGTTGTACTCAAGTAGCTTTTATACTCGATATAGCTATTGAGCTC
ATGTAAAACTTGCACTATGACCATCACAACATACTAGGTTTCACAGGTGAGCTGGTAATTCTAATTTGTTTGTGACTCACCAGTTACTAATATGTTCCGTTTTACGAGTA
AATGAAGACAAACCAACACAGCAGTATTTCGAAATCAAACACCTATCTTCCTCTCCCATCCTACTATTTTGTTCCTTAGTTTTGCACATCCTGATAATTTTTTAGTTGAA
ATATCATTTTGGT

Protein sequence

Show/hide protein sequence

MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAA
SVGACIEVKVSDEELAILLSNL

CsGy4G000480 (gene) of Cucumber (Gy14) v2.1 genome