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CsGy4G002625 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G002625
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPoly(A)-specific ribonuclease
Genome locationGy14Chr4:1669401..1669577
RNA-Seq ExpressionCsGy4G002625
SyntenyCsGy4G002625
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044541.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]2.43e-1878.95Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RL ELL VNDTIFN GSDSLLIALAYAKMKK LK S +  DGFLYGF YRIQGY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

KAA0044544.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]5.50e-1980.7Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

KAE8649090.1 hypothetical protein Csa_014788 [Cucumis sativus]3.26e-2594.74Show/hide
Query:  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY
        MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Subjt:  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY

XP_004151393.1 putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]1.06e-2182.14Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY
        RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY

XP_008454486.1 PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]7.71e-1980.7Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

TrEMBL top hitse value%identityAlignment
A0A0A0KTU4 Poly(A)-specific ribonuclease5.11e-2282.14Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY
        RLAELL+VNDT+F+ GSDSLLIALAY KMKKLKLS EN  GFLYGFQYRI+GYKT+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY

A0A0A0KYV8 Uncharacterized protein2.04e-2894.74Show/hide
Query:  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY
        MRLAELLEVNDTIFN GSDSLLIA A AKMKKLKLSRENADGFLYGFQYRIQGYKTY
Subjt:  MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTY

A0A1S3BY95 Poly(A)-specific ribonuclease3.73e-1980.7Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

A0A5A7TN62 Poly(A)-specific ribonuclease2.66e-1980.7Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

A0A5D3D333 Poly(A)-specific ribonuclease3.73e-1980.7Show/hide
Query:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY
        RLAELL VNDTIFN GSDSLLIALAYAKMKK LK S E  DGFLYGF YRI+GY+T+
Subjt:  RLAELLEVNDTIFNRGSDSLLIALAYAKMKK-LKLSRENADGFLYGFQYRIQGYKTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTT
TCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTTGCCGAGTTACTGGAGGTGAACGACACTATTTTCAACCGTGGTTCTGATAGTTTGTTGATAGCTTTGGCTTATGCGAAGATGAAGAAGCTGAAGCTT
TCTCGAGAGAATGCTGATGGATTTTTGTATGGTTTTCAATATAGAATTCAAGGATATAAAACCTATTATTAA
Protein sequenceShow/hide protein sequence
MRLAELLEVNDTIFNRGSDSLLIALAYAKMKKLKLSRENADGFLYGFQYRIQGYKTYY