CuGenDBv2

Gene ID	CsGy4G005390
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Small nuclear ribonucleoprotein Sm D2
Genome location	Gy14Chr4:3874699..3877986
RNA-Seq Expression	CsGy4G005390
Synteny	CsGy4G005390
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027248 - Small nuclear ribonucleoprotein Sm D2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044802.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa]

1.88e-69

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_004146504.1 small nuclear ribonucleoprotein Sm D2 [Cucumis sativus]

8.05e-70

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_022942850.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata]

3.28e-69

98.13

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_022983472.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima]

2.31e-69

99.07

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_027340559.1 small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius]

2.31e-69

99.07

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D2

3.90e-70

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A5A7TNA0 Small nuclear ribonucleoprotein Sm D2

9.08e-70

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A6J1EM19 Small nuclear ribonucleoprotein Sm D2

3.90e-70

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A6J1IZE4 Small nuclear ribonucleoprotein Sm D2

1.12e-69

99.07

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A6J1J3W3 Small nuclear ribonucleoprotein Sm D2

3.90e-70

100

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Query:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
        MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI
Subjt:  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

SwissProt top hits

e value

%identity

Alignment

P62316 Small nuclear ribonucleoprotein Sm D2

1.4e-45

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Query:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D2

1.4e-45

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Query:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D2

2.1e-41

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Query:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Subjt:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D2

1.4e-45

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Query:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D2

3.2e-45

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Query:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G47640.1 Small nuclear ribonucleoprotein family protein

1.6e-52

92.66

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Query:  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS
        MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDS
Subjt:  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein

1.2e-52

93.52

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Query:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein

1.2e-52

93.52

Show/hide

Query:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein

1.6e-52

92.66

Show/hide

Query:  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS
        MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDS
Subjt:  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT3G62840.2 Small nuclear ribonucleoprotein family protein

1.2e-52

93.52

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Query:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
        MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSV
Subjt:  MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCAT
AAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTG
GGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

mRNA sequence

Show/hide mRNA sequence

TAATTGGTATGTTTCAACCCAAAACGCAAGAAAACCTCGCGTTTAGGGTTTTTTCATCCTTTTTTTTTCTTTTTTGAAAAAGAGCAATATGAACCTTAGTTTTTCCACGC
GCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCG
CCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTT
TCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGT
TCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAG
GAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTT
TGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAA
ATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAG
ACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCTAGTCTTGTTCCTTGTTGCATATGT
TCATGTGATACCAAGGAATCAAATTTTCATCGGGATGTCAGTGTTTGTTTGTTGTGTTCATAAATCTTAGGGTTCAGCAATCATCAGTTGCTTTTGCATTTGTGCACACT
CAATTACTCTTCAACTTATGGTAATCGACATATGTTAGCTGTATTTCCTTCTTTTAGGACCTTTTCATATTTTTTTTATACGAGAAATTTCTCGTCTTCCCGTAGATTAG
AAGGAAGGATATTTTCATGGTGAATTCACATCAACAACTCTTTGCAATGACTTGTGTAGAAGTGTCTAACAGTTGGTTTTTACTAATGGTGATGGTCTGGTTAGTTATAT
GTACAAATTTCACCTCACAAGTTAATAGTGAGTGTGAGCTTTAGTCTAAAAGTTTGTGTTGTTTCATTGACGTATGAG

Protein sequence

Show/hide protein sequence

MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

CsGy4G005390 (gene) of Cucumber (Gy14) v2.1 genome