CuGenDBv2

Gene ID	CsGy4G005655
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	Gy14Chr4:4058883..4062640
RNA-Seq Expression	CsGy4G005655
Synteny	CsGy4G005655
Gene Ontology terms	NA
InterPro domains	IPR019314 - BLOC-1-related complex subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]

3.02e-96

100

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_008452025.1 PREDICTED: uncharacterized protein LOC103493156 [Cucumis melo]

3.38e-93

96.73

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSS +EDCTKTQSSLSQ QIL+AIEVVEKDSLA+AESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]

1.66e-78

84.18

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS+ SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]

4.75e-78

83.54

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS+ SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEK+SLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]

5.79e-79

84.81

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSST SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWT2 Uncharacterized protein

1.46e-96

100

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A1S3BTP0 uncharacterized protein LOC103493156

1.64e-93

96.73

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSS +EDCTKTQSSLSQ QIL+AIEVVEKDSLA+AESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A5D3CXL4 Uncharacterized protein

4.70e-67

95.73

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSS +EDCTKTQSSLSQ QIL+AIEVVEKDSLA+AESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLR
        VLDAATKGNRYINSSLR
Subjt:  VLDAATKGNRYINSSLR

A0A6J1EUG1 uncharacterized protein LOC111437668

8.03e-79

84.18

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS+ SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1J2E9 uncharacterized protein LOC111482798

2.30e-78

83.54

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS+ SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEK+SLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

1.2e-24

72.15

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Query:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL
        SSL+Q +ILK +  VEKDS A+AESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRL
Subjt:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL

AT4G23330.2 unknown protein

2.5e-38

71.93

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Query:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNV
        SSL+Q +ILK +  VEKDS A+AESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRLN+E+KG++NLAA+LK LRKNV
Subjt:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNV

Query:  DELDLAVNKLLNFP
        D LD AVNKLL  P
Subjt:  DELDLAVNKLLNFP

Sequences

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CDS sequence

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ATGGAGCAATCTCCGGCGGATTCTTCGACGACGAGTATCGAAACTGAATGTCAGATTCCAGCGACATCCCCAAATTCGACCACTTCTTCTGTCATTGAAGATTGCACCAA
AACCCAATCTTCTTTGAGCCAAGCCCAGATTCTCAAAGCCATTGAAGTCGTTGAGAAGGACTCTCTCGCCATGGCTGAGAGCTTCACCTCTCTCTTTGCTTCCCTGCGCT
CTGTTCTCTCCGAGGTCACCAGCAACTCGATTGATCATATGCATTGCTTCAACGATGCAGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCAACAAAGGGCAATCGA
TACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGATAATCTAGCTGCTCAGCTAAAGGTTTTGAGGAAGAACGTGGATGAACTTGACTTGGCTGTGAA
CAAGCTCCTTAATTTTCCATGA

mRNA sequence

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Protein sequence

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MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNR
YINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

CsGy4G005655 (gene) of Cucumber (Gy14) v2.1 genome