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CsGy4G009313 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G009313
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationGy14Chr4:7655592..7657188
RNA-Seq ExpressionCsGy4G009313
SyntenyCsGy4G009313
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]3.78e-3740.29Show/hide
Query:  GEASKVASCAVCDLLGHHNDQSPELK--------------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISR-----------------
        GE  K  SC VCD+LGHHNDQ PE+K                    RL+  RKE KNDE +L+VFKKVEVNL  L +IKSI R                 
Subjt:  GEASKVASCAVCDLLGHHNDQSPELK--------------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISR-----------------

Query:  -----------------------------------------------------------------------------------KIVLKISAKAIINVDKG
                                                                                           K  LKI AKA INVDKG
Subjt:  -----------------------------------------------------------------------------------KIVLKISAKAIINVDKG

Query:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
        LLSV+FDGDI S N FDDV+SS DH SLCALDT+E L K  EEHDKFNELI+Q TL+YV+NEF+KNK SDDD 
Subjt:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]8.01e-5156.12Show/hide
Query:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEE--ILKVFKKVEVNLSLLTE
        MAENS+  SSRTL+SN S S DNSV+EQVNLLTK FASFVKG+  KV SC V  LLGHHNDQ PELK ++      +ND        + +   NL    +
Subjt:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEE--ILKVFKKVEVNLSLLTE

Query:  IKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
            +       +  +  +  +GLLSV+FDG++VS +IFDDV SS  H SLCALDT+E L K LEEHDKFNELI+QATL++V+NEF+KNKPSDDDL
Subjt:  IKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

KAA0062405.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]1.39e-4056.89Show/hide
Query:  KGEASKVASCAVCDLLGHHNDQSPELK-------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDF
        +GE  KV SC VCDLLGHHNDQ PE+K             RL+ +RKE KNDEE+ +VF KVEVNL LLT +KSISR    K   +   +  +G+    F
Subjt:  KGEASKVASCAVCDLLGHHNDQSPELK-------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDF

Query:  DGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
                 FDDV SS DH SL ALDT+E L + LEEHDKFNELI+QATL+YV NEFSKNKPSDDDL
Subjt:  DGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

KAA0066992.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.33e-3753.76Show/hide
Query:  DNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKG
        D++ KE+  + T   +SF    +S   S  + D     N   P   RL+  RK+ KNDEE+L+ FKKVEVNLSLL  IKSI R                 
Subjt:  DNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKG

Query:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
        LLSV+FD D+VS NIF DV SS DH SLCALDT+E L K LEEHD FNELI+QATL+YV+NEF+KNKPSDDDL
Subjt:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

KAE8649315.1 hypothetical protein Csa_014717 [Cucumis sativus]1.32e-12396.97Show/hide
Query:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIK
        MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEA KVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEIL+VFKKVEVNLSLLTEIK
Subjt:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIK

Query:  S-ISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDLYFP
          ISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILV+ILEEHDKF+ELINQATLDYVDNEFSKNKPSDDDLYFP
Subjt:  S-ISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDLYFP

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein1.83e-3740.29Show/hide
Query:  GEASKVASCAVCDLLGHHNDQSPELK--------------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISR-----------------
        GE  K  SC VCD+LGHHNDQ PE+K                    RL+  RKE KNDE +L+VFKKVEVNL  L +IKSI R                 
Subjt:  GEASKVASCAVCDLLGHHNDQSPELK--------------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISR-----------------

Query:  -----------------------------------------------------------------------------------KIVLKISAKAIINVDKG
                                                                                           K  LKI AKA INVDKG
Subjt:  -----------------------------------------------------------------------------------KIVLKISAKAIINVDKG

Query:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
        LLSV+FDGDI S N FDDV+SS DH SLCALDT+E L K  EEHDKFNELI+Q TL+YV+NEF+KNK SDDD 
Subjt:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

A0A5D3BDS0 Transposon Ty3-I Gag-Pol polyprotein3.06e-3753.76Show/hide
Query:  DNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKG
        D++ KE+  + T   +SF    +S   S  + D     N   P   RL+  RK+ KNDEE+L+ FKKVEVNLSLL  IKSI R                 
Subjt:  DNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKG

Query:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
        LLSV+FD D+VS NIF DV SS DH SLCALDT+E L K LEEHD FNELI+QATL+YV+NEF+KNKPSDDDL
Subjt:  LLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family3.88e-5156.12Show/hide
Query:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEE--ILKVFKKVEVNLSLLTE
        MAENS+  SSRTL+SN S S DNSV+EQVNLLTK FASFVKG+  KV SC V  LLGHHNDQ PELK ++      +ND        + +   NL    +
Subjt:  MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEE--ILKVFKKVEVNLSLLTE

Query:  IKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
            +       +  +  +  +GLLSV+FDG++VS +IFDDV SS  H SLCALDT+E L K LEEHDKFNELI+QATL++V+NEF+KNKPSDDDL
Subjt:  IKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

A0A5D3DS97 Retrovirus-related Pol polyprotein from transposon 297 family6.72e-4156.89Show/hide
Query:  KGEASKVASCAVCDLLGHHNDQSPELK-------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDF
        +GE  KV SC VCDLLGHHNDQ PE+K             RL+ +RKE KNDEE+ +VF KVEVNL LLT +KSISR    K   +   +  +G+    F
Subjt:  KGEASKVASCAVCDLLGHHNDQSPELK-------------RLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDF

Query:  DGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL
                 FDDV SS DH SL ALDT+E L + LEEHDKFNELI+QATL+YV NEFSKNKPSDDDL
Subjt:  DGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDL

A0A5D3DU65 Retrotransposon gag protein1.64e-3661.72Show/hide
Query:  KRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHD
        KRL+  RKE KN+EE+LKVFKKVEVNL LL  IKSI R    +   +   +  K LLS++FD  IV  NIF DV +S +H SLCALDT+E L + L+EHD
Subjt:  KRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKISAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHD

Query:  KFNELINQATLDYVDNEFSKNKPSDDDL
        +FN+LINQATL+Y+DNEF+KNKPSDDDL
Subjt:  KFNELINQATLDYVDNEFSKNKPSDDDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAAATTCTCAAAACTTTTCTAGTAGAACACTTGAATCAAATGCTTCATTGTCTTGTGATAATTCGGTTAAAGAACAAGTGAATCTACTAACTAAATGTTTTGC
TTCTTTCGTGAAGGGAGAGGCTTCTAAAGTCGCCTCTTGTGCCGTTTGTGACTTGCTAGGTCACCACAATGATCAATCCCCGGAGCTTAAGAGGCTTACACTAACAAGGA
AGGAAATTAAGAATGACGAAGAAATCCTTAAAGTCTTCAAGAAGGTAGAAGTGAACCTTTCCCTCTTGACGGAAATCAAGAGCATATCGAGGAAGATCGTTCTTAAAATC
TCCGCTAAGGCCATAATTAATGTAGACAAAGGTCTTCTTAGTGTCGATTTTGATGGTGATATAGTGTCATTGAATATTTTTGATGATGTACACTCTTCTACTGATCATAC
CTCATTGTGTGCATTAGATACAGTAGAAATATTAGTAAAAATATTAGAAGAGCATGATAAATTTAATGAGTTGATTAATCAAGCAACTTTAGATTATGTCGATAATGAAT
TTTCTAAGAACAAACCTAGTGATGATGATCTCTATTTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAAATTCTCAAAACTTTTCTAGTAGAACACTTGAATCAAATGCTTCATTGTCTTGTGATAATTCGGTTAAAGAACAAGTGAATCTACTAACTAAATGTTTTGC
TTCTTTCGTGAAGGGAGAGGCTTCTAAAGTCGCCTCTTGTGCCGTTTGTGACTTGCTAGGTCACCACAATGATCAATCCCCGGAGCTTAAGAGGCTTACACTAACAAGGA
AGGAAATTAAGAATGACGAAGAAATCCTTAAAGTCTTCAAGAAGGTAGAAGTGAACCTTTCCCTCTTGACGGAAATCAAGAGCATATCGAGGAAGATCGTTCTTAAAATC
TCCGCTAAGGCCATAATTAATGTAGACAAAGGTCTTCTTAGTGTCGATTTTGATGGTGATATAGTGTCATTGAATATTTTTGATGATGTACACTCTTCTACTGATCATAC
CTCATTGTGTGCATTAGATACAGTAGAAATATTAGTAAAAATATTAGAAGAGCATGATAAATTTAATGAGTTGATTAATCAAGCAACTTTAGATTATGTCGATAATGAAT
TTTCTAAGAACAAACCTAGTGATGATGATCTCTATTTTCCTTGA
Protein sequenceShow/hide protein sequence
MAENSQNFSSRTLESNASLSCDNSVKEQVNLLTKCFASFVKGEASKVASCAVCDLLGHHNDQSPELKRLTLTRKEIKNDEEILKVFKKVEVNLSLLTEIKSISRKIVLKI
SAKAIINVDKGLLSVDFDGDIVSLNIFDDVHSSTDHTSLCALDTVEILVKILEEHDKFNELINQATLDYVDNEFSKNKPSDDDLYFP