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CsGy4G009565 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G009565
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr4:8007027..8007419
RNA-Seq ExpressionCsGy4G009565
SyntenyCsGy4G009565
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050828.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.83e-5371.64Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV
        M +VLDALK R+LEIKK+  D ELLMT+GRSDK+SWKGKEKS  MNSKGEARKCFLCHK  HFKK+  LNKSKEASSSKH  ETS  NVID Y    DSV
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV

Query:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        +VLM+S+ D+HDAWIMDSGCT+HM  N  F I+F
Subjt:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF

KAA0065973.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.95e-5375Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        MD+VLDALK RHLEIKK+ MD EL+M RGR DK+SW+GKEKSS MNSKGE RKCFLCHK+ HFKKHC LNKSKEASSSKH  ETS  NVID YDS ++LM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGC
         SH D+ DAW MDS C
Subjt:  VSHSDMHDAWIMDSGC

KAE8649328.1 hypothetical protein Csa_014533 [Cucumis sativus]2.66e-88100Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        VSHSDMHDAWIMDSGCTYHMISNQDFLIDF
Subjt:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF

KAE8649708.1 hypothetical protein Csa_011950 [Cucumis sativus]2.29e-5672.52Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAV-ETSATNVIDEYDSVKVL
        M VVLDALK R L+IKK+  DGELLMT+G S+K+SWKGKEKSS   SKG+ RKCFLCHKE HFKK+C LNK KEASSS++   ETS+ NVID YDSV+VL
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAV-ETSATNVIDEYDSVKVL

Query:  MVSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        MVSH D+ DAWIMDSGC YHM  N+DFLIDF
Subjt:  MVSHSDMHDAWIMDSGCTYHMISNQDFLIDF

TYK20957.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.72e-5373.85Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        M++VLDAL  R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK   FKKHC LNKSKEASSSKHA   S  NV +EYDSV+VLM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        VSH D+ +AWIMDSGC YHM  N DFLI+F
Subjt:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF

TrEMBL top hitse value%identityAlignment
A0A5A7SSD9 Retrovirus-related Pol polyprotein from transposon TNT 1-947.97e-5374.62Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        M++VLDALK R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK   FKKHC LNKSKEASSSKHA   S  NV +EYDSV+VLM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        VSH D+ +AWIMDSGC YHM  N DFLI+F
Subjt:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF

A0A5A7U6F0 Retrovirus-related Pol polyprotein from transposon TNT 1-948.85e-5471.64Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV
        M +VLDALK R+LEIKK+  D ELLMT+GRSDK+SWKGKEKS  MNSKGEARKCFLCHK  HFKK+  LNKSKEASSSKH  ETS  NVID Y    DSV
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV

Query:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        +VLM+S+ D+HDAWIMDSGCT+HM  N  F I+F
Subjt:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF

A0A5A7VCT5 Retrovirus-related Pol polyprotein from transposon TNT 1-949.43e-5475Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        MD+VLDALK RHLEIKK+ MD EL+M RGR DK+SW+GKEKSS MNSKGE RKCFLCHK+ HFKKHC LNKSKEASSSKH  ETS  NVID YDS ++LM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGC
         SH D+ DAW MDS C
Subjt:  VSHSDMHDAWIMDSGC

A0A5D3DBE9 Retrovirus-related Pol polyprotein from transposon TNT 1-943.74e-5373.85Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM
        M++VLDAL  R+LEIKK+L D EL+M RGRSDK+SWKGKEKSS MN KGEARKCFLCHK   FKKHC LNKSKEASSSKHA   S  NV +EYDSV+VLM
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLM

Query:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        VSH D+ +AWIMDSGC YHM  N DFLI+F
Subjt:  VSHSDMHDAWIMDSGCTYHMISNQDFLIDF

A0A5D3DKX3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.54e-5173.13Show/hide
Query:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV
        M +VLDALK R+LEIKK+  DGELLM RGRSDK SWKGKEKSS MNSKGEARKCF CHK  HFKKHC LNKSK+ASSSKHA   S  NV D Y    D V
Subjt:  MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEY----DSV

Query:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF
        +VLMVSH D+ +A IMDSGCTYHM  NQDFLI+F
Subjt:  KVLMVSHSDMHDAWIMDSGCTYHMISNQDFLIDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAGTGTTGGATGCCTTGAAGCCTAGACATCTTGAAATTAAGAAAAAACTCATGGATGGAGAGTTACTCATGACCAGAGGAAGAAGTGACAAAAGGAGCTGGAA
AGGCAAAGAGAAGAGTTCCATGATGAATTCAAAGGGGGAAGCTAGAAAGTGTTTCCTTTGTCATAAAGAAGTACACTTTAAGAAACATTGCCATTTGAATAAAAGCAAGG
AAGCATCGAGTAGCAAACATGCAGTTGAGACTAGTGCAACAAATGTTATCGATGAGTATGATTCAGTAAAGGTCTTGATGGTGTCTCACAGTGATATGCATGATGCTTGG
ATCATGGATTCAGGGTGCACGTATCACATGATTTCTAATCAGGATTTTTTGATTGACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAGTGTTGGATGCCTTGAAGCCTAGACATCTTGAAATTAAGAAAAAACTCATGGATGGAGAGTTACTCATGACCAGAGGAAGAAGTGACAAAAGGAGCTGGAA
AGGCAAAGAGAAGAGTTCCATGATGAATTCAAAGGGGGAAGCTAGAAAGTGTTTCCTTTGTCATAAAGAAGTACACTTTAAGAAACATTGCCATTTGAATAAAAGCAAGG
AAGCATCGAGTAGCAAACATGCAGTTGAGACTAGTGCAACAAATGTTATCGATGAGTATGATTCAGTAAAGGTCTTGATGGTGTCTCACAGTGATATGCATGATGCTTGG
ATCATGGATTCAGGGTGCACGTATCACATGATTTCTAATCAGGATTTTTTGATTGACTTTTAG
Protein sequenceShow/hide protein sequence
MDVVLDALKPRHLEIKKKLMDGELLMTRGRSDKRSWKGKEKSSMMNSKGEARKCFLCHKEVHFKKHCHLNKSKEASSSKHAVETSATNVIDEYDSVKVLMVSHSDMHDAW
IMDSGCTYHMISNQDFLIDF