CuGenDBv2

Gene ID	CsGy4G010100
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pectin lyase-like superfamily protein
Genome location	Gy14Chr4:8585263..8585796
RNA-Seq Expression	CsGy4G010100
Synteny	CsGy4G010100
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0004650 - polygalacturonase activity (molecular function) GO:0016829 - lyase activity (molecular function)
InterPro domains	IPR000743 - Glycoside hydrolase, family 28 IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8637262.1 hypothetical protein CSA_017678 [Cucumis sativus]

8.93e-49

79.41

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE NENGVEN+ L+N VFTKSDNGVRIKT PT SNGFV+HV+F+NI M NVK+PILIDQNYCPN+Q CS++ SGVKI+DVTYK+IEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

XP_004142576.2 polygalacturonase [Cucumis sativus]

2.58e-48

79.41

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE NENGVEN+ L+N VFTKSDNGVRIKT PT SNGFV+HV+F+NI M NVK+PILIDQNYCPN+Q CS++ SGVKI+DVTYK+IEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

XP_008460791.1 PREDICTED: polygalacturonase-like [Cucumis melo]

1.24e-52

87.25

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKEVNENGVEN+ L+N VFTKSDNGVRIKT PT SNGFVKHVVFENI M++VKHPILIDQNYCPNNQ CSV+ SGVKISDVTYKNIEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

XP_031736043.1 polygalacturonase-like [Cucumis sativus]

2.58e-48

79.41

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE NENGVEN+ L+N VFTKSDNGVRIKT PT SNGFV+HV+F+NI M NVK+PILIDQNYCPN+Q CS++ SGVKI+DVTYK+IEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

XP_038876456.1 polygalacturonase-like [Benincasa hispida]

2.06e-50

83.17

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKEVNENGVEN+ LMN VFTKSDNGVRIKT PT SNGFVKHV+F+NI M+NV++PILIDQNYCPNNQGC ++ SGVKISDVTYKNI+GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  A
        +
Subjt:  A

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M0F3 Uncharacterized protein

1.25e-48

79.41

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE NENGVEN+ L+N VFTKSDNGVRIKT PT SNGFV+HV+F+NI M NVK+PILIDQNYCPN+Q CS++ SGVKI+DVTYK+IEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

A0A1S3CD98 polygalacturonase-like

5.99e-53

87.25

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKEVNENGVEN+ L+N VFTKSDNGVRIKT PT SNGFVKHVVFENI M++VKHPILIDQNYCPNNQ CSV+ SGVKISDVTYKNIEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

A0A5A7VB33 Polygalacturonase-like

5.99e-53

87.25

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKEVNENGVEN+ L+N VFTKSDNGVRIKT PT SNGFVKHVVFENI M++VKHPILIDQNYCPNNQ CSV+ SGVKISDVTYKNIEGTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

A0A6J1EIK0 polygalacturonase-like

5.22e-44

74.51

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE +E GV+N+ LMN VFTKSDNGVRIKT     NGFVKHVVF+NI M+NVK+PI+IDQNYCP+N+GC  + +GVKISDVTYKNI GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

A0A6J1JN08 polygalacturonase-like

1.03e-43

75.49

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSLGKE +E GV+N+ LMNTVFTKSDNGVRIKT     NGFVKHVVFENI M+NVK+PI+IDQNYCP+N GC  + +GVKISDV YKNI GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
        +E
Subjt:  AE

SwissProt top hits

e value

%identity

Alignment

O22818 Probable polygalacturonase At2g43860

3.3e-21

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLG+   E GV+N+ + N  F  ++NGVRIKT    SN F +++VF++I M  VK+PI+IDQ+YC  ++ C  ++SGVK+S+V Y++I GTS T
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

P24548 Exopolygalacturonase (Fragment)

9.5e-21

50.98

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+S+GSLG+  NE  V  I + N   T S NGVRIKT P S  G    + F++ITM++V  PILIDQ YCP NQ  +   S VK+S +++KNI+GTS T
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         E
Subjt:  AE

P48979 Polygalacturonase

9.8e-26

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLGKE  E GV+N+ +    F+ + NG+RIK+    S GF ++++F++ TM NV++PI+IDQ+YCP+N+GC  + SGV+ISDVTY++I GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Q39766 Polygalacturonase

6.0e-23

53.92

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLGK  NE  VE I++ N   T + NG RIKT P    G V  + FE+ITM+NV  PILIDQ YCP N+    E+S VK+S++++KNI GTSA 
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         E
Subjt:  AE

Q39786 Polygalacturonase

6.0e-23

53.92

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLGK  NE  VE I++ N   T + NG RIKT P    G V  + FE+ITM+NV  PILIDQ YCP N+    E+S VK+S++++KNI GTSA 
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         E
Subjt:  AE

Arabidopsis top hits

e value

%identity

Alignment

AT1G05650.1 Pectin lyase-like superfamily protein

7.7e-34

64.71

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSL K++NE+GVEN+ + ++VFT S NGVRIK+    S GFV++V F+N+ M NV++PI+IDQNYCP+NQGC  E SGVKI+ VTYKNI+GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         E
Subjt:  AE

AT1G05660.1 Pectin lyase-like superfamily protein

5.5e-32

63.73

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HGVSIGSL KE+ E+GVEN+ + ++VFT S NGVRIK+    SNGFV+ V F+++ M NV++PI+IDQNYCP ++GC  E SGVKIS VTYKNI+GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         E
Subjt:  AE

AT1G65570.1 Pectin lyase-like superfamily protein

3.7e-28

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSL K + E GVEN+ + N VF ++DNG+RIK+ P  SNGFV+ V F    M NV +PILIDQNYCP +  C  ++SG+KI+DV Y  I GTSAT
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

AT2G43880.1 Pectin lyase-like superfamily protein

1.4e-30

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLG   NE GV+N+ + ++VFTK+ NGVRIKT    S GFV +VVF N+ M+NV++P++IDQNYCPN +GC  + SGVKIS VT+ NI+GTS T
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

AT2G43890.1 Pectin lyase-like superfamily protein

1.3e-33

62.75

Show/hide

Query:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT
        HG+SIGSLG++ NE GVENI L+N+VF+ SDNGVRIKT    S GFV++V+F+N+ M NV++PI++DQNYCP+NQGC  + SGVKIS V Y+NI+GTS T
Subjt:  HGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSAT

Query:  AE
         +
Subjt:  AE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGGCCCGCCATGGTGTAAGTATCGGGAGCCTAGGAAAAGAGGTCAATGAAAATGGAGTTGAAAATATAAGATTGATGAATACAGTGTTTACAAAATCAGATAATGG
TGTGAGGATAAAGACATCGCCTACGTCTAGCAATGGTTTCGTAAAACATGTTGTGTTTGAAAATATAACTATGCATAATGTTAAACATCCAATCTTAATCGATCAAAATT
ATTGTCCCAATAATCAAGGTTGTTCTGTCGAGGATTCTGGAGTGAAGATAAGTGATGTAACATACAAAAATATTGAAGGAACGTCAGCAACGGCAGAAGAAGAAGGAGAA
TAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MWARHGVSIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVEDSGVKISDVTYKNIEGTSATAEEEGE

CsGy4G010100 (gene) of Cucumber (Gy14) v2.1 genome