; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G010263 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G010263
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationGy14Chr4:8986870..8987437
RNA-Seq ExpressionCsGy4G010263
SyntenyCsGy4G010263
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]4.62e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]4.76e-2244.08Show/hide
Query:  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN------------TSTNRFQFLQTLQNLI------------AKDQVLRT
        +S  K+    +FLLTNICNL+ I L+STNY   +FQF  +L+AHKLY F+D             T+ +     QT  +              AKDQ    
Subjt:  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN------------TSTNRFQFLQTLQNLI------------AKDQVLRT

Query:  LINVTLYVEALAYIIGCTSSKEVSSTLENHYS-NLRSNLANLKTNLQLILKK
        LIN TL VEAL Y++GC SS +V  TLE HYS N R+N+ NLK++LQ I KK
Subjt:  LINVTLYVEALAYIIGCTSSKEVSSTLENHYS-NLRSNLANLKTNLQLILKK

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]3.11e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]2.69e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]3.40e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X21.50e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X31.30e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X11.64e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

A0A5D3CLI6 T4.52.24e-2147.22Show/hide
Query:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV
        LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+     TN      T+        ++ IAKDQ L T+IN TL  
Subjt:  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS-----TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYV

Query:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK
        EALAY++G TSSK+V   L   YS+  RSN+ NLK++LQ I KK
Subjt:  EALAYIIGCTSSKEVSSTLENHYSN-LRSNLANLKTNLQLILKK

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein2.31e-2244.08Show/hide
Query:  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN------------TSTNRFQFLQTLQNLI------------AKDQVLRT
        +S  K+    +FLLTNICNL+ I L+STNY   +FQF  +L+AHKLY F+D             T+ +     QT  +              AKDQ    
Subjt:  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN------------TSTNRFQFLQTLQNLI------------AKDQVLRT

Query:  LINVTLYVEALAYIIGCTSSKEVSSTLENHYS-NLRSNLANLKTNLQLILKK
        LIN TL VEAL Y++GC SS +V  TLE HYS N R+N+ NLK++LQ I KK
Subjt:  LINVTLYVEALAYIIGCTSSKEVSSTLENHYS-NLRSNLANLKTNLQLILKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACAACATATCAAAGACCTACGTCTACCCTTCCTCTCTATTTTTTGTTCTCTCCATCAATGGCTTCCTACCAGTCTTCTTAAACAAAAGAAATTTCTGATCTT
CCTCCTCACAAATATATGTAACCTCCTATTTATCACACTAGAATCAACAAATTATGTTTATTTGGAATTCCAATTCTCCAACATTTTGAGAGCACACAAGCTATACCGAT
TTGTTGATAACACAAGTACAAATCGATTTCAATTTCTTCAAACGCTACAAAATCTAATTGCTAAAGATCAAGTTCTTAGGACCTTGATCAATGTTACTTTATATGTAGAA
GCCTTAGCCTACATTATTGGTTGTACTTCATCAAAGGAAGTCTCGTCTACACTTGAAAATCACTACTCAAATTTACGATCAAATCTTGCTAATCTCAAAACTAATCTTCA
ATTGATTTTAAAGAAGTATTTGATTCATACAAGAGGAGGTTCAAAACTTGCAAATGTGTTTCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACAACATATCAAAGACCTACGTCTACCCTTCCTCTCTATTTTTTGTTCTCTCCATCAATGGCTTCCTACCAGTCTTCTTAAACAAAAGAAATTTCTGATCTT
CCTCCTCACAAATATATGTAACCTCCTATTTATCACACTAGAATCAACAAATTATGTTTATTTGGAATTCCAATTCTCCAACATTTTGAGAGCACACAAGCTATACCGAT
TTGTTGATAACACAAGTACAAATCGATTTCAATTTCTTCAAACGCTACAAAATCTAATTGCTAAAGATCAAGTTCTTAGGACCTTGATCAATGTTACTTTATATGTAGAA
GCCTTAGCCTACATTATTGGTTGTACTTCATCAAAGGAAGTCTCGTCTACACTTGAAAATCACTACTCAAATTTACGATCAAATCTTGCTAATCTCAAAACTAATCTTCA
ATTGATTTTAAAGAAGTATTTGATTCATACAAGAGGAGGTTCAAAACTTGCAAATGTGTTTCGGTAG
Protein sequenceShow/hide protein sequence
MVSQHIKDLRLPFLSIFCSLHQWLPTSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTSTNRFQFLQTLQNLIAKDQVLRTLINVTLYVE
ALAYIIGCTSSKEVSSTLENHYSNLRSNLANLKTNLQLILKKYLIHTRGGSKLANVFR