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CsGy4G010267 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G010267
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr4:9020803..9021186
RNA-Seq ExpressionCsGy4G010267
SyntenyCsGy4G010267
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649356.1 hypothetical protein Csa_019169, partial [Cucumis sativus]6.10e-58100Show/hide
Query:  TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSY
        TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSY
Subjt:  TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSY

KYP64173.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]1.22e-1643.08Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP
        IID GAS+H+ GNL LL +T T+    V LP+G  A  T EG   L       +VL  P+   NLI +SQLIDDANCVV+FT  LCV     +    L+ 
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP

Query:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL
        V ER + + Y R   +    K+ E+S F+L
Subjt:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL

XP_010681247.1 PREDICTED: uncharacterized protein LOC104896228 [Beta vulgaris subsp. vulgaris]3.33e-1739.85Show/hide
Query:  MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGAS
        +  I+D GASHHV G L  L+ T++I+   V LPDG     TM+G   L        VL  P    NLI +SQ+ID+++C+VRFT  LCV  + ++   +
Subjt:  MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGAS

Query:  LVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL
        L+   ER D + Y      ++AV  P +SEFEL
Subjt:  LVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL

XP_021716606.1 uncharacterized protein LOC110684457 [Chenopodium quinoa]1.78e-1945.38Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP
        IID GASHHV GN N L   ++IIS  V LPDG  A  T EG   L      + +L  P    NLI +S+LIDD+NC VRFT  LC  H  +    SL+ 
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP

Query:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL
          ER+D + Y R    + A+  P+IS FEL
Subjt:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL

XP_021766294.1 uncharacterized protein LOC110730780 [Chenopodium quinoa]2.61e-1740.44Show/hide
Query:  MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCV---QHMTNIL
        +  IID G SHHV G+ + L   ++++S  V LPDGT A  T EG   L      + VL  P    NLI +S++IDD+NC VRFT  LC    QH  +++
Subjt:  MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCV---QHMTNIL

Query:  GASLVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL
        G       ER+D + Y R    + AV  P +S FEL
Subjt:  GASLVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL

TrEMBL top hitse value%identityAlignment
A0A151TAW1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)5.92e-1743.08Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP
        IID GAS+H+ GNL LL +T T+    V LP+G  A  T EG   L       +VL  P+   NLI +SQLIDDANCVV+FT  LCV     +    L+ 
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP

Query:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL
        V ER + + Y R   +    K+ E+S F+L
Subjt:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL

A0A1S8ACL1 Uncharacterized protein (Fragment)3.54e-1145.12Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQR-----VLLSPAFQHNLILMSQLIDDANCVVRFT
        IID GASHH+ G+L LL    T+I+  V LPDG       +G+  L  R     VL  P+   NLIL+SQL++++NC+V+FT
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQR-----VLLSPAFQHNLILMSQLIDDANCVVRFT

A0A2K3MS94 Retrovirus-related Pol polyprotein from transposon TNT 1-943.83e-1134.85Show/hide
Query:  ECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQ-----RVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASL
        E I+D GAS+H+ G L ++ + + I +  + LPDG  A  T EG   L +      VL  P  + NLI +SQL+DD +C+V F+  LCV  M +     L
Subjt:  ECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQ-----RVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASL

Query:  VPVDERMDSMIYVRCNSYMYAVKVPEISEFEL
        +   +R D + Y R    + A  V  +++ EL
Subjt:  VPVDERMDSMIYVRCNSYMYAVKVPEISEFEL

A0A2K3PAJ3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.83e-1138.52Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP
        IID GAS+H+ GNL LL +   + +  V LPDG     T EG   L        VL  P    +LI +SQLID+ +C+++FT  LCV  M +     L+ 
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVP

Query:  VDERMDSMIYVRCNSYMYAVKV
        + ER+D + Y R      A+KV
Subjt:  VDERMDSMIYVRCNSYMYAVKV

A0A392NUX8 Uncharacterized protein (Fragment)8.35e-1436.92Show/hide
Query:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFTL-LCVQHMTNILGASLVP
        IID GAS+H+ GNLN + +   I++  V LPDG     T EG   L        VL  P    +LI +SQL D++NC+V+FT  LCV  M ++    L+ 
Subjt:  IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPAFQHNLILMSQLIDDANCVVRFTL-LCVQHMTNILGASLVP

Query:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL
          ER D + Y      + A K+  +++ EL
Subjt:  VDERMDSMIYVRCNSYMYAVKVPEISEFEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGAC
TGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTA
ATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGC
AATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGAC
TGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTA
ATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGC
AATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA
Protein sequenceShow/hide protein sequence
MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRC
NSYMYAVKVPEISEFEL