; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G011433 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011433
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationGy14Chr4:11049376..11049939
RNA-Seq ExpressionCsGy4G011433
SyntenyCsGy4G011433
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637253.1 hypothetical protein CSA_007716, partial [Cucumis sativus]2.71e-10899.38Show/hide
Query:  NDLGRSCSGLGLSHGGLKHPPNNFLFFFFFFVSIVFYSKKSNPCPALFSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQT
        NDLGRSCSGLGLSHGGLKHPPNNFLFFFFFFVSIVFYSKKSNPCPALFSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQT
Subjt:  NDLGRSCSGLGLSHGGLKHPPNNFLFFFFFFVSIVFYSKKSNPCPALFSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQT

Query:  LSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP
        LSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEP P
Subjt:  LSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP

KAE8637397.1 hypothetical protein CSA_023374 [Cucumis sativus]8.17e-1895.83Show/hide
Query:  LKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP
        L QIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEP P
Subjt:  LKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP

XP_010653936.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Vitis vinifera]8.41e-1447.79Show/hide
Query:  FSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFP
        F  F   + FS   I  H H L RF F      L   H+L + + +  F     S LL SCN+L  LK+IHA LI+SSGF  +SVASKLI LY+  NDF 
Subjt:  FSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFP

Query:  SAVSVLNSFPEPN
        SA S+ NSF EPN
Subjt:  SAVSVLNSFPEPN

XP_023526509.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita pepo subsp. pepo]8.18e-1875Show/hide
Query:  LQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP
        +QT SLLLQSC  L LLKQIHA+ ILSSGFD+V +ASKLIRLYA FND PSAVSVLN+FP   P
Subjt:  LQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNP

XP_034693609.1 putative pentatricopeptide repeat-containing protein At3g01580 [Vitis riparia]1.55e-1346.9Show/hide
Query:  FSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFP
        F  F   + FS   I  H H L RF F      L   H+L + + +  F     S +L SCN+L  LK+IHA LI+SSGF  +SVASKLI LY+  NDF 
Subjt:  FSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFP

Query:  SAVSVLNSFPEPN
        SA S+ NSF EPN
Subjt:  SAVSVLNSFPEPN

TrEMBL top hitse value%identityAlignment
A0A2R6QVC9 Pentatricopeptide repeat-containing protein4.57e-0948.84Show/hide
Query:  KLPSLLSPHYLRTI--HFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN
        KLP LL  H+LR+   H +  F   + S +L SC  L  LK+ HA  I+S+GF+ VSVASKLI LY+ F D   AVSV  +  EPN
Subjt:  KLPSLLSPHYLRTI--HFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN

A0A438DKQ0 Nuclear intron maturase 3, mitochondrial2.29e-0868.09Show/hide
Query:  LKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN
        LK+IHA LI+SSGF  +SVASKLI LY+  NDF SA S+ NSF EPN
Subjt:  LKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN

A0A5B7BUQ5 Uncharacterized protein (Fragment)5.44e-1047.19Show/hide
Query:  KLPSLLSPHYLRTI--HFSQLFRLQTLSL---LLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN
        K P LL  H+L+T+  H ++ F   + S    +L SC  L  LKQ HA LI+S+GF+ +++ASKLI LYA FND  SAVSV     EP+
Subjt:  KLPSLLSPHYLRTI--HFSQLFRLQTLSL---LLQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN

A0A5J4ZHJ3 Uncharacterized protein5.37e-1060.71Show/hide
Query:  LQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN
        L SC  L  LKQ+HA LI+S+GF+ +SVASKLI LYA FND  SAVSV  +  +PN
Subjt:  LQSCNHLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPN

B9T607 Pentatricopeptide repeat-containing protein, putative5.39e-1050.54Show/hide
Query:  PSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGF-DSVSVAS-KLIRLYANFNDFPSAVSVLNSFPEPNPCFGTLSSN
        P LL  HYL+T H S LF L      L SC  L  LKQIHA L++S+GF +S+S  S KLI  Y+ FND  SA+SV +   EPN    TLS N
Subjt:  PSLLSPHYLRTIHFSQLFRLQTLSLLLQSCNHLPLLKQIHAHLILSSGF-DSVSVAS-KLIRLYANFNDFPSAVSVLNSFPEPNPCFGTLSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAACGATCTCGGTAGGTCGTGTTCTGGTCTGGGATTGTCGCATGGTGGTCTGAAACACCCACCAAACAATTTTCTTTTCTTCTTCTTCTTTTTCGTTTCTATCGTTTT
TTACTCCAAGAAATCAAATCCTTGTCCCGCTCTGTTCTCTTCCTTTGCTCTGTACTCTTCGTTTTCATCACACACCATTCCTTTCCATTCCCATGTCCTCCCACGTTTTC
TTTTCTCTCTTAAACTCCCTTCTTTACTCTCTCCCCATTACCTGAGAACCATTCACTTCTCACAACTCTTTCGTTTACAAACCCTTTCTCTTCTTTTACAATCATGCAAC
CACCTTCCTCTTCTGAAGCAAATCCATGCCCATCTCATTCTCTCATCTGGGTTCGATTCTGTCTCCGTTGCCTCCAAGCTCATTCGCCTTTACGCCAACTTCAATGACTT
TCCCAGTGCTGTCTCTGTTCTTAACTCCTTCCCAGAGCCCAACCCATGCTTTGGAACTCTATCATCAAATCCTACTTTGACTCAGGTTTGTTCCATTCCGCCCTTTTGTT
GTATAAAAACATGA
mRNA sequenceShow/hide mRNA sequence
AAGAACGATCTCGGTAGGTCGTGTTCTGGTCTGGGATTGTCGCATGGTGGTCTGAAACACCCACCAAACAATTTTCTTTTCTTCTTCTTCTTTTTCGTTTCTATCGTTTT
TTACTCCAAGAAATCAAATCCTTGTCCCGCTCTGTTCTCTTCCTTTGCTCTGTACTCTTCGTTTTCATCACACACCATTCCTTTCCATTCCCATGTCCTCCCACGTTTTC
TTTTCTCTCTTAAACTCCCTTCTTTACTCTCTCCCCATTACCTGAGAACCATTCACTTCTCACAACTCTTTCGTTTACAAACCCTTTCTCTTCTTTTACAATCATGCAAC
CACCTTCCTCTTCTGAAGCAAATCCATGCCCATCTCATTCTCTCATCTGGGTTCGATTCTGTCTCCGTTGCCTCCAAGCTCATTCGCCTTTACGCCAACTTCAATGACTT
TCCCAGTGCTGTCTCTGTTCTTAACTCCTTCCCAGAGCCCAACCCATGCTTTGGAACTCTATCATCAAATCCTACTTTGACTCAGGTTTGTTCCATTCCGCCCTTTTGTT
GTATAAAAACATGA
Protein sequenceShow/hide protein sequence
KNDLGRSCSGLGLSHGGLKHPPNNFLFFFFFFVSIVFYSKKSNPCPALFSSFALYSSFSSHTIPFHSHVLPRFLFSLKLPSLLSPHYLRTIHFSQLFRLQTLSLLLQSCN
HLPLLKQIHAHLILSSGFDSVSVASKLIRLYANFNDFPSAVSVLNSFPEPNPCFGTLSSNPTLTQVCSIPPFCCIKT