; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G011436 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011436
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr4:11145284..11145436
RNA-Seq ExpressionCsGy4G011436
SyntenyCsGy4G011436
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637250.1 hypothetical protein CSA_007713 [Cucumis sativus]2.58e-29100Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

KAG6603417.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.57e-2386.27Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHE EKLRS+VYEKDLVKKPGWSFIELNGTIHGFVSGDRSH++T++IYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

XP_031739775.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis sativus]4.47e-27100Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

XP_031745526.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis sativus]4.40e-27100Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

XP_038883286.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Benincasa hispida]2.67e-2592.16Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHE EKLRS+VYEKDLVKKPGWSFIELNGTIHGFVSGDRSHN+TNEIYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

TrEMBL top hitse value%identityAlignment
A0A1S3C6I7 pentatricopeptide repeat-containing protein At4g35130, chloroplastic1.42e-2388.24Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHEAEKLRSLVYEK+L KKPGWSFIELNGTIHGFVSGDRSH + NEIYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

A0A2N9EHS2 Uncharacterized protein2.12e-1458.82Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W + E++R ++ EKDL KKPGWS  E  G IHGFVS DRSH++  EIYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

A0A6J1DKA1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like6.04e-2280.39Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WH+ EKLRS+VYEKDLVKKPGWSFIEL G +HGFVSGDRSH++T EIYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

A0A6J1EYH5 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like2.37e-2280.39Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHE EKLRS+VYEKD VKKPGWSF+ELNGT+HGFVSGDRSH +T++IYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

A0A6J1HTH3 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like1.27e-2284.31Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        WHE EKLRS+VYEK+LVKKPGWSFIELNGTIHGFVSGDRSH +T++IYD+L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

SwissProt top hitse value%identityAlignment
Q9C501 Pentatricopeptide repeat-containing protein At1g333502.1e-0743.14Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W EA + R ++  ++  K PGWS IE++  +H F S D+SH  T EIY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial2.1e-0741.18Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W + E++R ++  + LVK PG+S +ELNG +H F+ GD  H +  +IY+ L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

Q9SN85 Pentatricopeptide repeat-containing protein At3g475301.2e-0750.98Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W +  +LRSL+ EK +  KPG S IEL GT+H F+  D SH R  EIY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

Q9STE1 Pentatricopeptide repeat-containing protein At4g213004.7e-0745.1Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W    K+RSL+ E+++ K PG+S+IE+N   H FVSGD +H  ++ IY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

Q9SVA5 Pentatricopeptide repeat-containing protein At4g395306.1e-0745.1Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W EA+K+R  +  + +VK+PG S+I +N  +H F+S D+SH + N+IY+VL
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.4e-0843.14Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W+E  K R+L+ +K + K PG S IE++  +H F+ GD+ H R  EIY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

AT1G33350.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-0843.14Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W EA + R ++  ++  K PGWS IE++  +H F S D+SH  T EIY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.5e-0841.18Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W + E++R ++  + LVK PG+S +ELNG +H F+ GD  H +  +IY+ L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

AT3G47530.1 Pentatricopeptide repeat (PPR) superfamily protein8.8e-0950.98Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W +  +LRSL+ EK +  KPG S IEL GT+H F+  D SH R  EIY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL

AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.3e-0845.1Show/hide
Query:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL
        W    K+RSL+ E+++ K PG+S+IE+N   H FVSGD +H  ++ IY +L
Subjt:  WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGCATGAAGCCGAAAAGTTACGTAGCCTTGTGTACGAGAAAGATCTTGTGAAGAAACCAGGTTGGAGCTTCATTGAGTTAAATGGGACAATTCATGGGTTTGTTTCAGG
AGATAGATCACACAATAGGACCAATGAGATTTATGATGTATTG
mRNA sequenceShow/hide mRNA sequence
TGGCATGAAGCCGAAAAGTTACGTAGCCTTGTGTACGAGAAAGATCTTGTGAAGAAACCAGGTTGGAGCTTCATTGAGTTAAATGGGACAATTCATGGGTTTGTTTCAGG
AGATAGATCACACAATAGGACCAATGAGATTTATGATGTATTG
Protein sequenceShow/hide protein sequence
WHEAEKLRSLVYEKDLVKKPGWSFIELNGTIHGFVSGDRSHNRTNEIYDVL