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CsGy4G011437 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011437
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationGy14Chr4:11145445..11145711
RNA-Seq ExpressionCsGy4G011437
SyntenyCsGy4G011437
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637250.1 hypothetical protein CSA_007713 [Cucumis sativus]1.01e-57100Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

XP_008457591.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo]4.41e-5398.88Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT+LCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

XP_022967941.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita maxima]2.45e-5196.63Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT+LCDGRIWGALMGACRVYGDNKIA YAAHRLLELEPDNVGYYTLLSN+QAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

XP_031739775.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis sativus]1.62e-53100Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

XP_031745526.1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis sativus]1.44e-53100Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

TrEMBL top hitse value%identityAlignment
A0A1S3C6I7 pentatricopeptide repeat-containing protein At4g35130, chloroplastic2.13e-5398.88Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT+LCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

A0A6J1DKA1 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like2.30e-4892.13Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNI PDLEHYTCFVDLLSRSTRVREAFAIILRMT+  DGRIWGALMGACRVY DNKIANYAAHRLLELEPDNVGYYTLLSN+QA+
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

A0A6J1EYH5 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like1.19e-5196.63Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT+LCDGRIWGALMGACRVYGDNKIA YAAHRLLELEPDNVGYYTLLSN+QAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

A0A6J1HTH3 pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like1.19e-5196.63Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMT+LCDGRIWGALMGACRVYGDNKIA YAAHRLLELEPDNVGYYTLLSN+QAS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

A0A7J0FBT7 Uncharacterized protein3.03e-3165.52Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQ
        M+ RF IK DL HYTC VDLL+RS ++ EA AIIL++ +  DGRIWGAL+ A R +G+ KI  YAA RLLELEPDN GYYTLLSN Q
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQ

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148206.7e-1746.59Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA
        M   +NI P LEHY C VDL  R+  +REA  +I  M    +  IWG+LM ACR++G+ ++  +AA R+LELEPD+ G   L+SN  A
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA

P0C899 Putative pentatricopeptide repeat-containing protein At3g491423.9e-1747.73Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA
        M   + I P LEH  C VDLL R+ +V+EA+  I  M+   + R+WGAL+GACRV+ D  I   AA +L +L P+  GYY LLSN  A
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA

Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial3.0e-1746.07Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        M S F +KP   HY C VD+L R+ R  EA  +I  MT   D  +WG+L+GACR +    +A + A +L+E+EP+N G Y LLSN  AS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial1.1e-1643.53Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSN
        M+  + ++P  EHY+C VDLL R+ R+ EA   I  M    DG +WGAL+GAC+++ +  +A  A  +++E EP+N+GYY L+SN
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSN

Q9FFG8 Pentatricopeptide repeat-containing protein At5g442301.2e-1849.44Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        M   F ++P  +HYTC VDLL R+ R++EA  +I  M+    G +WGAL+GACR++ + +IA  AA  L ELEPD +G Y LLSN  AS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

Arabidopsis top hitse value%identityAlignment
AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein2.1e-1846.07Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        M S F +KP   HY C VD+L R+ R  EA  +I  MT   D  +WG+L+GACR +    +A + A +L+E+EP+N G Y LLSN  AS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein8.1e-1846.07Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        M S+F + P +EHY+C VD+L R+ +V +A  +I  MT   D  +WGAL+GAC+ +    +A  AA +L E EPDN G Y LLS+  AS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS

AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.8e-1847.73Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA
        M   + I P LEH  C VDLL R+ +V+EA+  I  M+   + R+WGAL+GACRV+ D  I   AA +L +L P+  GYY LLSN  A
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein4.7e-1846.59Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA
        M   +NI P LEHY C VDL  R+  +REA  +I  M    +  IWG+LM ACR++G+ ++  +AA R+LELEPD+ G   L+SN  A
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQA

AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein8.7e-2049.44Show/hide
Query:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS
        M   F ++P  +HYTC VDLL R+ R++EA  +I  M+    G +WGAL+GACR++ + +IA  AA  L ELEPD +G Y LLSN  AS
Subjt:  MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCAAGGTTCAACATTAAGCCTGATTTAGAACACTACACTTGTTTTGTTGATCTTTTGAGTAGATCAACAAGAGTAAGAGAGGCGTTTGCAATTATATTG
AGAATGACAAGTCTCTGTGATGGCAGGATTTGGGGTGCTCTTATGGGTGCCTGCCGGGTGTATGGAGATAATAAAATAGCTAACTATGCTGCACACAGGCTTCTT
GAATTAGAACCTGACAATGTAGGGTATTATACATTGTTGAGCAATTCACAGGCCAGT
mRNA sequenceShow/hide mRNA sequence
ATGAGGTCAAGGTTCAACATTAAGCCTGATTTAGAACACTACACTTGTTTTGTTGATCTTTTGAGTAGATCAACAAGAGTAAGAGAGGCGTTTGCAATTATATTG
AGAATGACAAGTCTCTGTGATGGCAGGATTTGGGGTGCTCTTATGGGTGCCTGCCGGGTGTATGGAGATAATAAAATAGCTAACTATGCTGCACACAGGCTTCTT
GAATTAGAACCTGACAATGTAGGGTATTATACATTGTTGAGCAATTCACAGGCCAGT
Protein sequenceShow/hide protein sequence
MRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTSLCDGRIWGALMGACRVYGDNKIANYAAHRLLELEPDNVGYYTLLSNSQAS