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CsGy4G011880 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011880
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionmeiotic recombination protein SPO11-1
Genome locationGy14Chr4:12019057..12020466
RNA-Seq ExpressionCsGy4G011880
SyntenyCsGy4G011880
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0051026 - chiasma assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002815 - Spo11/DNA topoisomerase VI subunit A
IPR013049 - Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR036078 - Spo11/DNA topoisomerase VI subunit A superfamily
IPR036388 - Winged helix-like DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44215.2 hypothetical protein Csa_019091 [Cucumis sativus]1.66e-8498.51Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSY SNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

XP_031744432.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]1.22e-8298.51Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSY SNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

XP_031744442.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]8.88e-8398.51Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSY SNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

XP_031744459.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]7.49e-8698.51Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSY SNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

XP_031744460.1 meiotic recombination protein SPO11-1-like isoform X3 [Cucumis sativus]2.28e-8395Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSY SNSLEN    FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAAL
        IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG  L
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAAL

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X22.75e-8094.78Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSY +NSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD+YY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X13.58e-7691.97Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSY +NSLEN    FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        +YYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

A0A5D3C9M3 Meiotic recombination protein SPO11-1 isoform X24.65e-8294.03Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSY +NSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRH SKRD+YY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        MHPSIFTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  MHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

A0A6J1CDC7 meiotic recombination protein SPO11-12.21e-6779.56Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG R S ER +++R+I E+TRSMIVELSNGSS+M+AIDRFK+Y +NSLEN    FNLSEGK++LTLQ+ESHVRRLDVLLRVLLI++QLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        IYYMHPS+F+DQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

A0A6J1IGM0 meiotic recombination protein SPO11-14.04e-7084.67Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        M GN G  ERI++MRKI ELTRSMIVELSNGSS+MIAIDRFK+Y  NS+EN    FNLSEGK++LTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG
        IYYMHPS+FTDQSVVDRAINDICILLQCSRHNLNVV 
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVG

SwissProt top hitse value%identityAlignment
Q5ZPV8 Meiotic recombination protein SPO11-19.9e-2948.95Show/hide
Query:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS
        E  R   E   ++ +I  L R ++ E++ G S  +A+ R+++Y S++           +++  G DVL+ L R SH  RL+VLLRVLL++QQLL +N+H 
Subjt:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS

Query:  SKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAA
        SKRDIYYM+PSIF +Q+VVDRAINDIC+L +CSRHNLNVV  A
Subjt:  SKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAA

Q7Y021 Meiotic recombination protein SPO11-19.9e-2948.95Show/hide
Query:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS
        E  R   E   ++ +I  L R ++ E++ G S  +A+ R+++Y S++           +++  G DVL+ L R SH  RL+VLLRVLL++QQLL +N+H 
Subjt:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS

Query:  SKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAA
        SKRDIYYM+PSIF +Q+VVDRAINDIC+L +CSRHNLNVV  A
Subjt:  SKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGAA

Q9LZ03 DNA topoisomerase 6 subunit A1.3e-0738.24Show/hide
Query:  SHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGA
        S VR+  +  R+L +I QL   N H +KRD++Y    +F DQ+  D  ++D+  +L C+R +LNV+ A
Subjt:  SHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGA

Q9M4A2 Meiotic recombination protein SPO11-19.6e-3252.21Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG     E   ++++I + T+S++V+L+ G S  I+I++F++Y  N   +    S+   G+++ TL++E    R+D+LLRVLLI+QQLL ENRH+SKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVV
        IYYMHPS F  QS+VDRAI DICIL QCSR+NLNVV
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVV

Q9Y5K1 Meiotic recombination protein SPO112.3e-0927.91Show/hide
Query:  EVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRES----HVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFT
        EV+  I  + + +I  L+   +    ID   S+ +   E+   L       T + +S      ++  ++L++L +I +L+  N +++KRDIYY    +F 
Subjt:  EVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRES----HVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFT

Query:  DQSVVDRAINDICILLQCSRHNLNVVGAA
        +Q+VVD  INDI  +L+ SR +L+++  +
Subjt:  DQSVVDRAINDICILLQCSRHNLNVVGAA

Arabidopsis top hitse value%identityAlignment
AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein6.8e-3352.21Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG     E   ++++I + T+S++V+L+ G S  I+I++F++Y  N   +    S+   G+++ TL++E    R+D+LLRVLLI+QQLL ENRH+SKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVV
        IYYMHPS F  QS+VDRAI DICIL QCSR+NLNVV
Subjt:  IYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVV

AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein9.0e-0938.24Show/hide
Query:  SHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGA
        S VR+  +  R+L +I QL   N H +KRD++Y    +F DQ+  D  ++D+  +L C+R +LNV+ A
Subjt:  SHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTAATGAGAAAAATCACAGAGCTAACGAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGC
CATCGATCGATTCAAAAGTTACCGCTCCAATTCCCTTGAAAACTGGTTCAATTTATCTGAAGGAAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAG
ATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTATATTTACAGATCAGTCA
GTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTGAATGTGGTTGGTGCTGCACTTCATTTTACTTTGGCTCCAATTTACATATC
TTCTTTTCCTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTAATGAGAAAAATCACAGAGCTAACGAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGC
CATCGATCGATTCAAAAGTTACCGCTCCAATTCCCTTGAAAACTGGTTCAATTTATCTGAAGGAAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAG
ATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTATATTTACAGATCAGTCA
GTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTGAATGTGGTTGGTGCTGCACTTCATTTTACTTTGGCTCCAATTTACATATC
TTCTTTTCCTCCATGA
Protein sequenceShow/hide protein sequence
MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYRSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQS
VVDRAINDICILLQCSRHNLNVVGAALHFTLAPIYISSFPP