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CsGy4G011942 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011942
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationGy14Chr4:12543326..12543733
RNA-Seq ExpressionCsGy4G011942
SyntenyCsGy4G011942
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]9.26e-5785.34Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD VKKVE DSNPFSE ESHF +AKFY KN+NILE L A+TPL KGE+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHESA
        NSQLKSLATT+PHESA
Subjt:  NSQLKSLATTKPHESA

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]9.17e-5785.34Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD VKKVE DSNPFSE ESHF +AKFY KN+NILE L A+TPL KGE+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHESA
        NSQLKSLATT+PHESA
Subjt:  NSQLKSLATTKPHESA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]9.26e-5785.34Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD VKKVE DSNPFSE ESHF +AKFY KN+NILE L A+TPL KGE+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHESA
        NSQLKSLATT+PHESA
Subjt:  NSQLKSLATTKPHESA

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]9.26e-5785.34Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD VKKVE DSNPFSE ESHF +AKFY KN+NILE L A+TPL KGE+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHESA
        NSQLKSLATT+PHESA
Subjt:  NSQLKSLATTKPHESA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]9.26e-5785.34Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD VKKVE DSNPFSE ESHF +AKFY KN+NILE L A+TPL KGE+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHESA
        NSQLKSLATT+PHESA
Subjt:  NSQLKSLATTKPHESA

TrEMBL top hitse value%identityAlignment
A0A5A7U859 Uncharacterized protein2.08e-5574.78Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFH+IDSRTTYKLLLG PWIHGNGVVTS LHQCFKFYQD VKKVE DSNPFSE ESHF+NAKFYLKND+  +A+  + PL+  E+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHES
        N QLKSLA+ +PH+S
Subjt:  NSQLKSLATTKPHES

A0A5A7V696 Uncharacterized protein1.13e-5274.78Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MI LEL I DLK NALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLH+ FKFYQD VKKVE DSNPF E ESHF +AKFYLKNDN  E +  + PL+  E+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHES
        N QLKSLA+ +PH+S
Subjt:  NSQLKSLATTKPHES

A0A5D3BEV6 Uncharacterized protein1.10e-5373.91Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        M+RLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVV STLHQCFKFYQ+ VKKVE DSNPFSE +SHF +AKFYLKND+  EA+  + PL+  E+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHES
        N QLKSLA+ +PH+S
Subjt:  NSQLKSLATTKPHES

A0A5D3CEH6 Uncharacterized protein3.43e-5473.91Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        MIRLEL I DLK +ALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD +KK + DSNPFSE ESHF + KFYLK D+  EA+  + PL+  E+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHES
        N QLKSLA+ KPH+S
Subjt:  NSQLKSLATTKPHES

A0A5D3CTK9 Uncharacterized protein8.70e-5676.32Show/hide
Query:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN
        M+ LELTID LK +ALFHVIDS TTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD +KKVEVDSNPF+E ESHF +AKFYLKNDNI E + A+ PLIK E+
Subjt:  MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGEN

Query:  NSQLKSLATTKPHE
        N QL+SL + +PH+
Subjt:  NSQLKSLATTKPHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACGATTAGAACTCACAATTGACGACCTAAAGGTCAATGCATTGTTTCATGTCATAGACTCAAGGACCACTTACAAGTTGTTACTAGGCCGTCCTTGGATTCATGG
AAACGGAGTAGTAACTTCAACACTGCATCAGTGCTTCAAATTTTATCAAGACAGTGTAAAGAAGGTTGAAGTCGACTCTAATCCATTCTCAGAGACTGAGTCTCACTTCA
CAAATGCAAAGTTTTATTTGAAGAATGATAATATCTTAGAAGCTTTGCTTGCTAAAACCCCTCTTATAAAAGGAGAAAATAATTCACAGCTGAAATCACTTGCAACCACA
AAACCACATGAAAGTGCGGAACCTTTAATTCGAAAAAGGGTGAAGCATACACTAGCAACACAAAGAGTATCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATACGATTAGAACTCACAATTGACGACCTAAAGGTCAATGCATTGTTTCATGTCATAGACTCAAGGACCACTTACAAGTTGTTACTAGGCCGTCCTTGGATTCATGG
AAACGGAGTAGTAACTTCAACACTGCATCAGTGCTTCAAATTTTATCAAGACAGTGTAAAGAAGGTTGAAGTCGACTCTAATCCATTCTCAGAGACTGAGTCTCACTTCA
CAAATGCAAAGTTTTATTTGAAGAATGATAATATCTTAGAAGCTTTGCTTGCTAAAACCCCTCTTATAAAAGGAGAAAATAATTCACAGCTGAAATCACTTGCAACCACA
AAACCACATGAAAGTGCGGAACCTTTAATTCGAAAAAGGGTGAAGCATACACTAGCAACACAAAGAGTATCATCTTGA
Protein sequenceShow/hide protein sequence
MIRLELTIDDLKVNALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDSVKKVEVDSNPFSETESHFTNAKFYLKNDNILEALLAKTPLIKGENNSQLKSLATT
KPHESAEPLIRKRVKHTLATQRVSS