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CsGy4G011945 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011945
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationGy14Chr4:12544865..12545245
RNA-Seq ExpressionCsGy4G011945
SyntenyCsGy4G011945
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039558.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.42e-6381.6Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+IDYIN+WRAL LDCKD LT+LS VEMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIASRGTKDFP+PEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKS+VKES+V+N  PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
KAA0051584.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.88e-6383.2Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+IDYIN+WRAL LDCKD LT+LS VEMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIASRGTKDFP+PEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKS+VKES+VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
KAA0065856.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.13e-6382.4Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEPIIDY+N+WRAL LDCKD L +LS  EMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIAS GTKDFPIPEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKSTVKES+VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
TYK23272.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.27e-6279.2Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+I+YIN+WRAL  DCKD LT+L  +EMCTQGMHWGLLYILQ IK HTFEEL TRAHD+ELSIASRG KDFPIP++ KDKKEMK AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
         IVKS +KESIVVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
TYK25947.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]8.27e-6380Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEPIIDYINQWRAL LDCKD L +LS VE+CTQGMHWGLLYILQ  K +TFEEL T A+DM+LSIA+RG KDFPIPEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        KIVKSTVKE +VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein6.88e-6481.6Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+IDYIN+WRAL LDCKD LT+LS VEMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIASRGTKDFP+PEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKS+VKES+V+N  PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
A0A5A7U8E4 Retrotransposon gag protein9.13e-6483.2Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+IDYIN+WRAL LDCKD LT+LS VEMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIASRGTKDFP+PEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKS+VKES+VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
A0A5D3D7S0 Ty3-gypsy retrotransposon protein5.47e-6482.4Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEPIIDY+N+WRAL LDCKD L +LS  EMCTQGMHWGLLYILQ IK  TFEEL TRAHDMELSIAS GTKDFPIPEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        K+VKSTVKES+VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
A0A5D3DI80 Ty3-gypsy retrotransposon protein1.10e-6279.2Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEP+I+YIN+WRAL  DCKD LT+L  +EMCTQGMHWGLLYILQ IK HTFEEL TRAHD+ELSIASRG KDFPIP++ KDKKEMK AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
         IVKS +KESIVVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
A0A5D3DQJ5 Retrotransposon protein putative ty3-gypsy sub-class4.00e-6380Show/hide
Query:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE
        MM+LTNTKQR GEPIIDYINQWRAL LDCKD L +LS VE+CTQGMHWGLLYILQ  K +TFEEL T A+DM+LSIA+RG KDFPIPEV KDKKE K AE
Subjt:  MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAE

Query:  KIVKSTVKESIVVNTAPLKFSKGKE
        KIVKSTVKE +VVNT PLKFSK KE
Subjt:  KIVKSTVKESIVVNTAPLKFSKGKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGCTTACAAACACGAAACAAAGAAATGGAGAACCAATCATCGACTACATCAATCAATGGAGAGCTCTAAGACTTGACTGTAAAGATTGGCTCACCAAATTGTC
AATTGTAGAAATGTGCACCCAAGGCATGCACTGGGGACTCCTCTACATTTTGCAGAAAATAAAGCTCCACACATTTGAAGAACTGGAAACTCGGGCTCATGATATGGAGT
TGAGCATCGCCAGTAGAGGAACTAAAGATTTTCCTATTCCTGAAGTAAATAAAGACAAGAAAGAGATGAAGGTTGCTGAAAAGATAGTGAAGAGCACCGTGAAAGAATCT
ATTGTCGTAAACACGGCCCCGTTGAAGTTCTCCAAAGGAAAGGAAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGCTTACAAACACGAAACAAAGAAATGGAGAACCAATCATCGACTACATCAATCAATGGAGAGCTCTAAGACTTGACTGTAAAGATTGGCTCACCAAATTGTC
AATTGTAGAAATGTGCACCCAAGGCATGCACTGGGGACTCCTCTACATTTTGCAGAAAATAAAGCTCCACACATTTGAAGAACTGGAAACTCGGGCTCATGATATGGAGT
TGAGCATCGCCAGTAGAGGAACTAAAGATTTTCCTATTCCTGAAGTAAATAAAGACAAGAAAGAGATGAAGGTTGCTGAAAAGATAGTGAAGAGCACCGTGAAAGAATCT
ATTGTCGTAAACACGGCCCCGTTGAAGTTCTCCAAAGGAAAGGAAGCATGA
Protein sequenceShow/hide protein sequence
MMKLTNTKQRNGEPIIDYINQWRALRLDCKDWLTKLSIVEMCTQGMHWGLLYILQKIKLHTFEELETRAHDMELSIASRGTKDFPIPEVNKDKKEMKVAEKIVKSTVKES
IVVNTAPLKFSKGKEA