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CsGy4G011978 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G011978
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationGy14Chr4:12777886..12778317
RNA-Seq ExpressionCsGy4G011978
SyntenyCsGy4G011978
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037227.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.72e-5185Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        M VVLSVQKWRHYLLGR+FTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEI+YQPGLQNK ADALSR +H +ELNTM+T+GIVD+EI+ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

KAA0061435.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.17e-5183Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGR+FTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK ADALSR DHS+EL  ++T GI+D+E++ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

KAA0062472.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]1.56e-5285Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGR+FTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEI+YQPGLQNK ADALSR +H +ELNTM+ +GIVD+EI+ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]8.68e-5799Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEII KEVEMDQ
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

XP_031745419.1 uncharacterized protein LOC116405630 [Cucumis sativus]5.43e-5799Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEII KEVEMDQ
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

TrEMBL top hitse value%identityAlignment
A0A5A7TEH1 Transposon Tf2-6 polyprotein3.36e-5181.82Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMD
        MAVVL  QKWRHYLLG+KFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK ADALS+ + + ELN MTT GI+DIE++ KEVE D
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMD

A0A5A7V2N3 Transposon Tf2-1 polyprotein isoform X17.55e-5385Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGR+FTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEI+YQPGLQNK ADALSR +H +ELNTM+ +GIVD+EI+ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

A0A5A7V6H6 Transposon Ty3-G Gag-Pol polyprotein1.05e-5183Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGR+FTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK ADALSR DHS+EL  ++T GI+D+E++ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

A0A5D3CPQ1 Transposon Ty3-G Gag-Pol polyprotein8.32e-5285Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        M VVLSVQKWRHYLLGR+FTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEI+YQPGLQNK ADALSR +H +ELNTM+T+GIVD+EI+ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

A0A5D3DD73 Transposon Ty3-G Gag-Pol polyprotein1.05e-5183Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ
        MAVVLSVQKWRHYLLGR+FTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNK ADALSR DHS+EL  ++T GI+D+E++ KEVE D+
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-0943.66Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR
        +A+V + + +RHYLLGR F I SD + L +L   ++   +  +W  KL  +DF+I Y  G +N VADALSR
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR

P20825 Retrovirus-related Pol polyprotein from transposon 2979.0e-1043.66Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR
        +A+V + + +RHYLLGR+F I SD + L++L   +E   + ++W  +L  Y F+I Y  G +N VADALSR
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.9e-0632.22Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIE
        + ++ ++  +R+ L G+ FT+ +D  +L  L  + E   + Q+WL  L  YDF + Y  G +N VADA+SR  +++   T  T+  +D E
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.3e-0534.72Show/hide
Query:  MAVVLSVQKWRHYLLGR-KFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR
        +A++ S+   R YL G     + +D + L F L  R    + ++W  ++  Y+ E++Y+PG  N VADALSR
Subjt:  MAVVLSVQKWRHYLLGR-KFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSR

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.9e-0632.22Show/hide
Query:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIE
        + ++ ++  +R+ L G+ FT+ +D  +L  L  + E   + Q+WL  L  YDF + Y  G +N VADA+SR  +++   T  T+  +D E
Subjt:  MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTGTCCTTTCGGTGCAAAAATGGAGACATTATCTCCTGGGCAGAAAGTTCACAATTGTTTCAGATCAGAAGGCTCTGAAATTTCTGTTAGAACAGAGGGAAGT
TCAGCCTCAATTCCAAAAGTGGCTCACAAAACTTTTGGGGTATGACTTTGAGATCTTATACCAGCCGGGTCTGCAGAATAAGGTGGCGGATGCTCTCTCAAGGAAGGACC
ATTCGGTGGAGTTAAATACAATGACAACCACAGGCATAGTTGATATAGAGATAATAGCGAAGGAAGTTGAAATGGATCAATAA
mRNA sequenceShow/hide mRNA sequence
CACAGAATGGTCATCCCATCGCATTCTTCAGCAAGAAACTGTCCCCAAGAGCCCAGGGTAAGTCGATCTATGAAAGGGAATTGATGGCGGTTGTCCTTTCGGTGCAAAAA
TGGAGACATTATCTCCTGGGCAGAAAGTTCACAATTGTTTCAGATCAGAAGGCTCTGAAATTTCTGTTAGAACAGAGGGAAGTTCAGCCTCAATTCCAAAAGTGGCTCAC
AAAACTTTTGGGGTATGACTTTGAGATCTTATACCAGCCGGGTCTGCAGAATAAGGTGGCGGATGCTCTCTCAAGGAAGGACCATTCGGTGGAGTTAAATACAATGACAA
CCACAGGCATAGTTGATATAGAGATAATAGCGAAGGAAGTTGAAATGGATCAATAACTTCAGAAAATTATTGCCGAACTTAAGGGAGAGGTGGATCAAGGTG
Protein sequenceShow/hide protein sequence
MAVVLSVQKWRHYLLGRKFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKVADALSRKDHSVELNTMTTTGIVDIEIIAKEVEMDQ