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CsGy4G012040 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G012040
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionmeiotic recombination protein SPO11-1
Genome locationGy14Chr4:13106385..13107728
RNA-Seq ExpressionCsGy4G012040
SyntenyCsGy4G012040
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0051026 - chiasma assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002815 - Spo11/DNA topoisomerase VI subunit A
IPR013049 - Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR036078 - Spo11/DNA topoisomerase VI subunit A superfamily
IPR036388 - Winged helix-like DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44215.2 hypothetical protein Csa_019091 [Cucumis sativus]2.22e-71100Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

XP_031744432.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]1.29e-69100Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

XP_031744442.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]9.58e-70100Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

XP_031744459.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]1.11e-72100Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

XP_031745984.1 meiotic recombination protein SPO11-1-like isoform X2 [Cucumis sativus]2.68e-69100Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X23.00e-6795.61Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSYC+NSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD+YY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X13.75e-6392.31Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSYC+NSLEN    FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDR
        +YYMHPSIFTDQSVVDR
Subjt:  IYYMHPSIFTDQSVVDR

A0A5D3C9M3 Meiotic recombination protein SPO11-1 isoform X26.64e-6994.74Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY
        MEGNRGSLERIEV+RKITELTRSMIVELSNGSS+MIAIDRFKSYC+NSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLL ENRH SKRD+YY
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYY

Query:  MHPSIFTDQSVVDR
        MHPSIFTDQSVVDR
Subjt:  MHPSIFTDQSVVDR

A0A6J1CDC7 meiotic recombination protein SPO11-12.22e-5477.78Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG R S ER +++R+I E+TRSMIVELSNGSS+M+AIDRFK+YC+NSLEN    FNLSEGK++LTLQ+ESHVRRLDVLLRVLLI++QLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDR
        IYYMHPS+F+DQSVVDR
Subjt:  IYYMHPSIFTDQSVVDR

A0A6J1IGM0 meiotic recombination protein SPO11-14.20e-5783.76Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        M GN G  ERI++MRKI ELTRSMIVELSNGSS+MIAIDRFK+YC NS+EN    FNLSEGK++LTLQRESHVRRLDVLLRVLLIIQQLL ENRHSSKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENW---FNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDR
        IYYMHPS+FTDQSVVDR
Subjt:  IYYMHPSIFTDQSVVDR

SwissProt top hitse value%identityAlignment
Q5ZPV8 Meiotic recombination protein SPO11-12.1e-1944.63Show/hide
Query:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS
        E  R   E   ++ +I  L R ++ E++ G S  +A+ R+++YCS++           +++  G DVL+ L R SH  RL+VLLRVLL++QQLL +N+H 
Subjt:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS

Query:  SKRDIYYMHPSIFTDQSVVDR
        SKRDIYYM+PSIF +Q+VVDR
Subjt:  SKRDIYYMHPSIFTDQSVVDR

Q7Y021 Meiotic recombination protein SPO11-12.1e-1944.63Show/hide
Query:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS
        E  R   E   ++ +I  L R ++ E++ G S  +A+ R+++YCS++           +++  G DVL+ L R SH  RL+VLLRVLL++QQLL +N+H 
Subjt:  EGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNS-------LENWFNLSEGKDVLT-LQRESHVRRLDVLLRVLLIIQQLLGENRHS

Query:  SKRDIYYMHPSIFTDQSVVDR
        SKRDIYYM+PSIF +Q+VVDR
Subjt:  SKRDIYYMHPSIFTDQSVVDR

Q9M4A2 Meiotic recombination protein SPO11-11.4e-2347.86Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG     E   ++++I + T+S++V+L+ G S  I+I++F++YC N   +    S+   G+++ TL++E    R+D+LLRVLLI+QQLL ENRH+SKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDR
        IYYMHPS F  QS+VDR
Subjt:  IYYMHPSIFTDQSVVDR

Q9Y5K1 Meiotic recombination protein SPO117.3e-0426.42Show/hide
Query:  EVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRES----HVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFT
        EV+  I  + + +I  L+   +    ID   S+ +   E+   L       T + +S      ++  ++L++L +I +L+  N +++KRDIYY    +F 
Subjt:  EVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRES----HVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFT

Query:  DQSVVD
        +Q+VVD
Subjt:  DQSVVD

Arabidopsis top hitse value%identityAlignment
AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein1.0e-2447.86Show/hide
Query:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD
        MEG     E   ++++I + T+S++V+L+ G S  I+I++F++YC N   +    S+   G+++ TL++E    R+D+LLRVLLI+QQLL ENRH+SKRD
Subjt:  MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSE---GKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRD

Query:  IYYMHPSIFTDQSVVDR
        IYYMHPS F  QS+VDR
Subjt:  IYYMHPSIFTDQSVVDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTAATGAGAAAAATCACAGAGCTAACGAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGC
CATCGATCGATTCAAAAGTTACTGCTCCAATTCCCTTGAAAACTGGTTCAATTTATCTGAAGGGAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAG
ATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTATATTTACAGATCAGTCA
GTTGTTGACCGGCAATCAACGACATTTGCATTCTTTTGCAATGTAGCCGGCATAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTAATGAGAAAAATCACAGAGCTAACGAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGC
CATCGATCGATTCAAAAGTTACTGCTCCAATTCCCTTGAAAACTGGTTCAATTTATCTGAAGGGAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAG
ATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTATATTTACAGATCAGTCA
GTTGTTGACCGGCAATCAACGACATTTGCATTCTTTTGCAATGTAGCCGGCATAATCTGA
Protein sequenceShow/hide protein sequence
MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENWFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQS
VVDRQSTTFAFFCNVAGII