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CsGy4G012288 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G012288
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L39
Genome locationGy14Chr4:14408238..14409264
RNA-Seq ExpressionCsGy4G012288
SyntenyCsGy4G012288
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649466.1 hypothetical protein Csa_018885 [Cucumis sativus]6.12e-68100Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL
        MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL

KAE9466617.1 hypothetical protein C3L33_01460, partial [Rhododendron williamsianum]2.79e-0961.54Show/hide
Query:  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR
        SHKTF +KKKLAKK R NRP PHWIR+R DNTI         L  H+ARVL+
Subjt:  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR

XP_011656152.1 60S ribosomal protein L39-1-like [Cucumis sativus]1.17e-1088.24Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT
        MLSHKTF MKKK AKKKR NRP PHWIRLRIDNT
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNT

XP_011657167.1 60S ribosomal protein L39-like [Cucumis sativus]1.88e-1288.89Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID
        MLSHKTFRMKKKL KKKR NRP PHWIRLR DNTID
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID

XP_011657256.1 60S ribosomal protein L39-like [Cucumis sativus]6.19e-1186.11Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID
        MLSHKTFRMKKKLAKKKR NRP  +WIRLR DNTID
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID

TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein1.46e-0982.86Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

A0A1S3BCZ7 60S ribosomal protein L391.46e-0982.86Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

A0A6A4MLJ7 Uncharacterized protein (Fragment)1.35e-0961.54Show/hide
Query:  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR
        SHKTF +KKKLAKK R NRP PHWIR+R DNTI         L  H+ARVL+
Subjt:  SHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTID------PLLVSHKARVLR

A0A6J1C1Z7 60S ribosomal protein L391.46e-0982.86Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

A0A6J1HZ80 60S ribosomal protein L391.46e-0982.86Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-19.2e-0774.29Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

P51425 60S ribosomal protein L391.9e-0777.14Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

P51426 60S ribosomal protein L39-21.9e-0777.14Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

Q5SMI4 60S ribosomal protein L39-35.4e-0774.29Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTF++KKKLAKK R NRP P+WIR+R DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

Q6KAJ8 60S ribosomal protein L39-11.9e-0777.14Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHKTFR+KKKLAKK R NRP P+WIR+R DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein3.0e-0577.78Show/hide
Query:  MKKKLAKKKRHNRPNPHWIRLRIDNTI
        +KKKL KK R NRP PHWIRLR DNTI
Subjt:  MKKKLAKKKRHNRPNPHWIRLRIDNTI

AT3G02190.1 Ribosomal protein L39 family protein2.1e-0668.57Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHK+F +KKKL KK R NRP P+WIRLR DN I
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI

AT4G31985.1 Ribosomal protein L39 family protein6.5e-0874.29Show/hide
Query:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI
        M SHK+F +KKKL KK R NRP PHWIRLR DNTI
Subjt:  MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCC
GTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCA
CCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTCTCATAAGACTTTTAGAATGAAGAAGAAGCTCGCAAAGAAGAAGAGGCATAATAGGCCGAACCCGCACTGGATCCGCCTGAGAATTGACAACACGATCGATCC
GTTACTAGTGTCGCACAAAGCTAGGGTTCTAAGAGGAAATAGAAAGAGCATCAAAAATTCATCGCACCATATTAAGTGGGATCATATACTTAAACCCACATGCCTTATCA
CCGATTGTTTTTCCTGGTATCTGGCTTTAAACTTTAGTTTCTTAGATGCTAGAGCTTCCAGTAAATATAATCTTTTATGA
Protein sequenceShow/hide protein sequence
MLSHKTFRMKKKLAKKKRHNRPNPHWIRLRIDNTIDPLLVSHKARVLRGNRKSIKNSSHHIKWDHILKPTCLITDCFSWYLALNFSFLDARASSKYNLL