; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G012316 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G012316
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionReverse transcriptase
Genome locationGy14Chr4:15510455..15510604
RNA-Seq ExpressionCsGy4G012316
SyntenyCsGy4G012316
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045567.1 pol protein [Cucumis melo var. makuwa]5.17e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
KAA0051723.1 pol protein [Cucumis melo var. makuwa]8.10e-1987.76Show/hide
Query:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        MGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
KAA0052789.1 pol protein [Cucumis melo var. makuwa]5.29e-1989.8Show/hide
Query:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        MGPELV+STNEAIQKIR+RMQTAQSRQKSY DVRRKDL+FDVG+KVFLK
Subjt:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
KAA0065333.1 pol protein [Cucumis melo var. makuwa]7.30e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
TYK07859.1 pol protein [Cucumis melo var. makuwa]7.58e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+ TNEAIQKIR+ MQTAQSRQKSYADVRRKDL+FDVG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
TrEMBL top hitse value%identityAlignment
A0A5A7TUR3 Pol protein2.50e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
A0A5A7U738 Pol protein3.92e-1987.76Show/hide
Query:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        MGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
A0A5A7UGY4 Pol protein2.56e-1989.8Show/hide
Query:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        MGPELV+STNEAIQKIR+RMQTAQSRQKSY DVRRKDL+FDVG+KVFLK
Subjt:  MGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
A0A5A7VAY2 Pol protein3.54e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+STNEAIQKIR+RM TAQSRQKSYADVRRKDL+F+VG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
A0A5D3CC21 Pol protein3.67e-1988Show/hide
Query:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
        LMGPELV+ TNEAIQKIR+ MQTAQSRQKSYADVRRKDL+FDVG+KVFLK
Subjt:  LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATGGGACCTGAATTAGTTCGGTCTACTAATGAGGCTATTCAAAAGATTAGAGCACGTATGCAAACAGCGCAGAGTAGACAGAAGAGTTATGCGGATGTACGGCGAAA
AGACCTTAAGTTCGATGTGGGAGAAAAGGTATTCTTGAAG
mRNA sequenceShow/hide mRNA sequence
TTGATGGGACCTGAATTAGTTCGGTCTACTAATGAGGCTATTCAAAAGATTAGAGCACGTATGCAAACAGCGCAGAGTAGACAGAAGAGTTATGCGGATGTACGGCGAAA
AGACCTTAAGTTCGATGTGGGAGAAAAGGTATTCTTGAAG
Protein sequenceShow/hide protein sequence
LMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFLK