CuGenDBv2

Gene ID	CsGy4G013700
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ribosomal protein S24e family protein
Genome location	Gy14Chr4:18687652..18689969
RNA-Seq Expression	CsGy4G013700
Synteny	CsGy4G013700
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7033867.1 hypothetical protein SDJN02_03592, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.73e-81

67.98

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Query:  MHNVVFVILFSGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGK
        M N  FV L SGL +GKL G +R++LK+D++ LL+GCNLS +DVK EY R+F PTS+M+QFPS +AY NAF+ I R+G + R+ERADRSQW+LLSPYNGK
Subjt:  MHNVVFVILFSGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGK

Query:  TVLLEGIPRNALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        T+LL+GIPRNA ++D+ERFLSGCDYDA+SIN F+R S   P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  TVLLEGIPRNALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

XP_004142097.1 uncharacterized protein LOC101220680 isoform X1 [Cucumis sativus]

3.63e-113

100

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
        GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA

Query:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
Subjt:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

XP_008447318.1 PREDICTED: uncharacterized protein LOC103489786 [Cucumis melo]

1.95e-94

83.13

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
        G  +GKL G SRS LK+DVLILL+GCNLS +D+KFEY RNF P S+MIQFPS+QAYQ+AFQAIARKG+L R+ERADRSQWELLSPYNGKTV L+GIPRNA
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA

Query:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        LVED+ERFLSGCDYDASSIN YRGSFS PTK ATVQF SPIQAMHAFLTKNRGFCLNNQISM+VLQ
Subjt:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

XP_022972751.1 uncharacterized protein LOC111471264 [Cucurbita maxima]

2.31e-79

71.43

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Query:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
        +GL +GKL G +R+ LK+D++ LL+GCNL+ +DVK EY R+F PTS+M+QFPS QAY NAF+ I RKG L R+ERADRSQW++LSPYNGKTVLL+GIPRN
Subjt:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN

Query:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        ALVED+ERFL GCDYDA+SIN F+R SF  P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

XP_023518188.1 uncharacterized protein LOC111781730 [Cucurbita pepo subsp. pepo]

7.00e-79

71.43

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Query:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
        +GL +GKL G +R+ LK+D++ LL+GCNL+ +DVK EY R+F PTS+M+QFPS QAY NAF+ I RKG L R+ERADRSQW++LSPYNGKTVLL+GIPRN
Subjt:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN

Query:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        ALVED+ERFL GCDYDA+SIN F+R SF  P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L225 Uncharacterized protein

1.76e-113

100

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
        GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA

Query:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
Subjt:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

A0A1S3BH58 uncharacterized protein LOC103489786

9.44e-95

83.13

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA
        G  +GKL G SRS LK+DVLILL+GCNLS +D+KFEY RNF P S+MIQFPS+QAYQ+AFQAIARKG+L R+ERADRSQWELLSPYNGKTV L+GIPRNA
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNA

Query:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        LVED+ERFLSGCDYDASSIN YRGSFS PTK ATVQF SPIQAMHAFLTKNRGFCLNNQISM+VLQ
Subjt:  LVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

A0A6J1HGY5 uncharacterized protein LOC111463377

9.13e-79

70.83

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Query:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
        +GL +GKL G +R+ LK+D++ LL+GCNL+ +DVK EY R+F PTS+M+QFPS QAY NAF+ I RKG L R+ERADRSQW++LSPY+GKTVLL+GIPRN
Subjt:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN

Query:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        ALVED+ERFL GCDYDA+SIN F+R SF  P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

A0A6J1I6U3 uncharacterized protein LOC111471264

1.12e-79

71.43

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Query:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
        +GL +GKL G +R+ LK+D++ LL+GCNL+ +DVK EY R+F PTS+M+QFPS QAY NAF+ I RKG L R+ERADRSQW++LSPYNGKTVLL+GIPRN
Subjt:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN

Query:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        ALVED+ERFL GCDYDA+SIN F+R SF  P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

A0A6J1INA4 uncharacterized protein LOC111477976

2.47e-76

67.86

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Query:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
        +GL +GKL G +R++LK+D++ LL+GCNLS +DVK EY R+F PTS+M+QFPS ++Y NAF+ I R+G + R+ERADRSQW+LLSPYNGKTVLL+GIPRN
Subjt:  SGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN

Query:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        A ++D+ERFLSGCDYDA+ IN F+R S   P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Subjt:  ALVEDLERFLSGCDYDASSIN-FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G02740.1 Ribosomal protein S24e family protein

7.5e-39

46.15

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVR--NFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPR
        G  +GK  G S+  LK+D++ +L+GC+L+ +D+KF Y R  N  P ++ +QFPS  AY  A + IA+KG L R+E+A R+QW+ + PY GK V L GIP 
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVR--NFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPR

Query:  NALVEDLERFLSGCDYDASSINFYR-GSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ
        NA+ +D++RFLSGC Y   SI F          + A V+F S  QAM+A++TKNR F LN +I+++VLQ
Subjt:  NALVEDLERFLSGCDYDASSINFYR-GSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

AT5G02740.2 Ribosomal protein S24e family protein

3.1e-29

47.97

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Query:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVR--NFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPR
        G  +GK  G S+  LK+D++ +L+GC+L+ +D+KF Y R  N  P ++ +QFPS  AY  A + IA+KG L R+E+A R+QW+ + PY GK V L GIP 
Subjt:  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVR--NFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPR

Query:  NALVEDLERFLSGCDYDASSINF
        NA+ +D++RFLSGC Y   SI F
Subjt:  NALVEDLERFLSGCDYDASSINF

Sequences

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CDS sequence

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mRNA sequence

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ATGCATAATGTGGTTTTTGTGATACTCTTCTCAGGTTTGAGGTTTGGGAAATTGGTCGGTGCCTCACGGAGTATGCTAAAATCGGATGTGCTCATTTTGCTTCAAGGATG
TAATTTGAGTTTTGAGGATGTCAAATTTGAATACGTCCGAAATTTCGTCCCGACCTCCATAATGATCCAGTTCCCCTCCGAGCAGGCCTATCAAAATGCTTTTCAAGCGA
TTGCAAGAAAAGGTTACTTGCAAAGAATGGAGCGGGCTGATCGTTCGCAGTGGGAGCTGCTTTCACCTTACAATGGAAAAACTGTTTTACTAGAAGGAATACCTCGAAAT
GCATTGGTAGAAGATCTGGAACGCTTCTTATCTGGTTGTGACTATGATGCAAGCTCAATCAACTTTTACAGGGGATCCTTTTCAGCCCCCACAAAAACGGCAACGGTGCA
GTTCCGTTCACCAATACAAGCAATGCATGCATTTCTCACAAAAAACAGAGGCTTTTGTCTGAACAACCAAATTTCGATGCGAGTTCTCCAATAACTAGTAACTTTTTGTC
ATTTGTATTCTGACTTTTTTTTTAGTTGGCTCAGTGGCTGGGGTTTTTGTAGTTGCTCTTATAAGTTATGATTTGCATCTTCGTATCTCAAGTCTCCAGTAGGTTATCCA
CATTCAAAGTGACATGAAATCTTTCATTTTTCACTTATTAGCAGTTTGTTTGTGCTAAAGAATCTGCTTTTGTAAGGTAGGGTTTTTGGACTTTTGAATATTGAATTTAT
ATGAATAATATAAGGTTGTCCAAGCATCTAGTTTTACTAGATTGTGTTTCTTCATTG

Protein sequence

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MHNVVFVILFSGLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAFQAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRN
ALVEDLERFLSGCDYDASSINFYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ

CsGy4G013700 (gene) of Cucumber (Gy14) v2.1 genome