; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G017630 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G017630
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionribosomal RNA-processing protein 17
Genome locationGy14Chr4:22761558..22768319
RNA-Seq ExpressionCsGy4G017630
SyntenyCsGy4G017630
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR019186 - Nucleolar protein 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]8.90e-11494.39Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]1.39e-9480.61Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTAT   QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]1.07e-9277.5Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +T  +QLL KDKKH+LP+TKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]7.14e-125100Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
XP_038881021.1 nucleolar protein 12 [Benincasa hispida]1.63e-9881.5Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ+EEA+RR RIEARKKR+LEKDLVL+GGVLPADR VD++ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D    + +EEE+PLAP SE TTYD+GN+KVTV TSEVSRE+EIDPIDKPQTAT   QL  KDKKHNLP+TKKK FKKVAKQR RPK RSKRDK+KG+KKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
TrEMBL top hitse value%identityAlignment
A0A0A0KYB4 Uncharacterized protein3.46e-125100Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
A0A1S3C1A3 ribosomal RNA-processing protein 174.31e-11494.39Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
A0A6J1CL67 ribosomal RNA-processing protein 17-like6.73e-9580.61Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTAT   QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
A0A6J1EG67 ribosomal RNA-processing protein 177.35e-9378Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE T YD+GN+KVTVTTSEV R++EIDPIDKPQ +T  +QLL KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
A0A6J1KRQ7 ribosomal RNA-processing protein 178.55e-9277Show/hide
Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV RE+EIDPIDKPQ +T  +QLL KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).1.6e-3454.01Show/hide
Query:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE
        EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQ+EEA RR RIEARK RKLE+ +V   G    D   +D+ D + +E
Subjt:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE

Query:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQT-ATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK
        E EP A  S  T YD G +KVTVTTSE+SRE+E +PI K +T +T +        K  +P+ K K  K+ +++R   K   KRDKKK
Subjt:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQT-ATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
GGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAA
AAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTTCCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTA
GCACCACTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGAC
AGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAACTTC
GAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
AACCAAAAAAAAAAGAAAAGAAAAAAAGACCTAAACAAGCCTTGTAGCGCCCGAATTTGGAGCTAAAAACGCAAGGCGAGGGTCTTCTTTGTAGAGTGCGGAACTCACGG
CGTTGTGTCTCAGTTTTGGAGGTTAGAGCGGCGGGGTCTTTTGCTCTCTGTTCAACGGCGTCGTAGAAGTCGAGTTTGTTTATTCTCTTTCAAGAGAGTTTATTCTCTTT
CAAGAGAGTTTATTCCCATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCT
GTCTCTTTCAATGAGAAGGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGAT
GCGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTTCCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATG
AGGAAGAGGAACCATTAGCACCACTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCA
ATTGACAAGCCACAGACAGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAG
GGGAAGGCCAAAACTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGATAATAGCTTCTTACCTACCTCTGTCCTAAATGTTCAATGCGATATGATTTA
TTTGTTTTATCATGAGAATATGTAGTGATCTTGAGCATTGGGTGTCTTTGAGGGTTTTGTATTATTACATTATAAAAGCTTTCCCGTTTTGCAAACTGACTGCAATTTTT
CTTTTTATGTGCAGCTCGATTTGTTTTCATTCAGCATTCCTAGAAAGAAAAAAATCATCCTAGTAAAGAAAAATTATCGTATTGCTTTACAAGTATCATGTTTGATAATT
AATATATTTTTGGAATAACAAATTAGTTTTCTTTAGCCTCAAATTTCATTTCTTATGGTAAATGGGAAAGTATCGTGTATATCTAGTCTCGACGTTCACCGTTTGGTAAA
AGTTTAGTGGTTGAAGAATCTAGATCTACTTTCGCTATTTCAAGAACGTGACAAATGAGATTCCTCGTCCTCCTTACTCATTGCCCAACAAATTTGCACCTTTTATCAAA
ACATGTGGTCTCGAGTTTTTGGAAAATTGTTTCCACAAATTCAGTTGAAAACAATGTTGGGAACTCATGAAAGCTTGTTATTTAGTGTTTGGTTTTTCAATTCTTTTGGT
ACCCC
Protein sequenceShow/hide protein sequence
MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPL
APLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK