; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G017830 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G017830
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein 5, chloroplastic
Genome locationGy14Chr4:23019463..23021390
RNA-Seq ExpressionCsGy4G017830
SyntenyCsGy4G017830
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]1.18e-93100Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_008455762.1 PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]1.04e-8293.46Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]5.89e-7283.23Show/hide
Query:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV
        FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS++ QP AEAKKEDVPV
Subjt:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV

Query:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]1.04e-7081.53Show/hide
Query:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDV
        FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S  VKAASE DATGETDS++ +P+AEAKKEDV
Subjt:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]5.47e-7586.08Show/hide
Query:  MASFLLSSNPLSTSFH---FST--SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKED
        MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIGFQPKHFNGVRL   SFVEN ASL+VKAASE DA G+TDSS+ QP AEAKKED
Subjt:  MASFLLSSNPLSTSFH---FST--SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein5.71e-94100Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic5.04e-8393.46Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.85e-7283.23Show/hide
Query:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV
        FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS++ QP AEAKKEDVPV
Subjt:  FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV

Query:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like4.12e-7080.89Show/hide
Query:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDV
        FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S +VKAASE DATGETDS++ +P AEAKKEDV
Subjt:  FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like7.78e-7080.65Show/hide
Query:  FLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV
        FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN SFVENT S +VKAASE D TGETDS++ +P+AEAKKEDVPV
Subjt:  FLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPV

Query:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic4.9e-1547.18Show/hide
Query:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKED--VPVDKLPLESKLQERL
        F+T+P   S S FP  +A P S +    IG       G R+      +   + +  A++   A  +++ +D    +E+KKE   V VDKLPLESKL+ER 
Subjt:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKED--VPVDKLPLESKLQERL

Query:  EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic6.3e-1554.21Show/hide
Query:  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSK
        G RL  H  V      T   +V AA+E  A  + D S V+ A      ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSK
Subjt:  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSK

Query:  MKKLKNV
        MKKLKNV
Subjt:  MKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic3.1e-1445.51Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S   +   +VVKAA+      E +S +      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 52.2e-1545.51Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S   +   +VVKAA+      E +S +      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTT
GCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGA
CTGATGCTACGGGAGAAACTGACAGTAGTGACGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGG
CTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGAT
GAAGAAGTTGAAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
CCGAAGGTAAGCGAGGGGCTCCCAGTTCACACCATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTT
TCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATA
CAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGACGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGAT
AAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTT
GAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGATAATCTTGAGCTCCTTGAATTCAATTCTTGCAGTTTTCAGTTCTAGAGGTGCCAT
TTCTCCTTATCGCTTCCAATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATT
CTTCTTAGTTTTGAACGACTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTTATTGGTAATCTTGCTAAAAAAACCCTTG
CACAAAGGCATTGTCTTAGAAACTTAGACTAAGATGAAATTGCACGTCGAGATGAATCCCCCCCAGGGAGGAGTTTGAGCTTGACGTCTGTCTCAATTTGTACTGACTGT
GGTTGAATAAAGATGAAAGGTAAGAGTTCTGGC
Protein sequenceShow/hide protein sequence
MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQER
LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV