; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G018180 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G018180
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionsigma factor binding protein 2, chloroplastic
Genome locationGy14Chr4:23587510..23588206
RNA-Seq ExpressionCsGy4G018180
SyntenyCsGy4G018180
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]5.64e-9586.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]5.91e-111100Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]1.62e-9486.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]1.08e-9486.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
XP_011653858.1 sigma factor binding protein 2, chloroplastic [Cucumis sativus]3.89e-111100Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
TrEMBL top hitse value%identityAlignment
A0A0A0L3J8 VQ domain-containing protein1.88e-111100Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
A0A1S3C276 sigma factor binding protein 2, chloroplastic5.24e-9586.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
A0A5A7SJV9 Sigma factor binding protein 22.73e-9586.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
A0A5D3BYM2 Sigma factor binding protein 27.83e-9586.59Show/hide
Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like4.92e-6066.46Show/hide
Query:  AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDG
        AGT TG+ HR LD V+RRKPTKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+LTGQDADFPDPS FPP+AV D AA  D ++NT +       
Subjt:  AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDG

Query:  ATNLIVNSNNSSLVDEVPAEDD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR
            ++N+NN SL  E+P EDD  LGSFYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Subjt:  ATNLIVNSNNSSLVDEVPAEDD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR
SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.7e-0532.48Show/hide
Query:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDD
        K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS                         T + ++    S ++  P + +
Subjt:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDD

Query:  ILGSFYDDFDDLIFPSP
        + G +Y   D+ +F +P
Subjt:  ILGSFYDDFDDLIFPSP
Q9LDH1 Sigma factor binding protein 1, chloroplastic1.1e-0752.63Show/hide
Query:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS
        T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTGQDA D  P+P   P S
Subjt:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS
Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.2e-0632.48Show/hide
Query:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDD
        K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS                         T + ++    S ++  P + +
Subjt:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDD

Query:  ILGSFYDDFDDLIFPSP
        + G +Y   D+ +F +P
Subjt:  ILGSFYDDFDDLIFPSP
AT3G56710.1 sigma factor binding protein 17.5e-0952.63Show/hide
Query:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS
        T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTGQDA D  P+P   P S
Subjt:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCAT
CAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTA
AATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTACTAATCTTATTGTGAATAGT
AACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAATTTCTC
GGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGTGA
mRNA sequenceShow/hide mRNA sequence
CTTGTCGGTTTCTTCCCTCTCCTAATCCCTATATTTTCCCTCGCTCTCTCTCCTTTTTCCCCTAAAAACCCTTTTTTCCCCTTCCGAAATGGACGCTGGCACCGCCACCG
GAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCATCAAAGTTGTGTACATATCCAAC
CCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATG
CGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTACTAATCTTATTGTGAATAGTAACAACTCTTCACTTGTTGACG
AGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAATTTCTCGGGGTTGCTTCCGGCTCCCGTG
GCGGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTATTGATATTATAATGTGTGAAAGATCCTTGATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTT
TTAATGAATATATATATATAATTGTCTATTAATTGGG
Protein sequenceShow/hide protein sequence
MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNS
NNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR