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CsGy4G018290 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G018290
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L18
Genome locationGy14Chr4:23795865..23798218
RNA-Seq ExpressionCsGy4G018290
SyntenyCsGy4G018290
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]3.57e-6392.66Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AV+DSVREA
Subjt:  AVIDSVREA

XP_004144339.1 uncharacterized protein LOC101221233 [Cucumis sativus]1.58e-66100Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]8.77e-6496.33Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]5.07e-6392.66Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AV+DSVREA
Subjt:  AVIDSVREA

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]1.46e-6291.74Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AV+DSVREA
Subjt:  AVIDSVREA

TrEMBL top hitse value%identityAlignment
A0A0A0L0Z6 Uncharacterized protein7.63e-67100Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA

A0A1S3CHJ0 50S ribosomal protein L184.25e-6496.33Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA

A0A5D3DYC1 50S ribosomal protein L184.25e-6496.33Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA

A0A6J1HE21 uncharacterized protein LOC1114620252.46e-6392.66Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AV+DSVREA
Subjt:  AVIDSVREA

A0A6J1I0R8 uncharacterized protein LOC1114679407.04e-6391.74Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AV+DSVREA
Subjt:  AVIDSVREA

SwissProt top hitse value%identityAlignment
A7HM36 50S ribosomal protein L183.3e-0841.67Show/hide
Query:  TNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA
        + K + AQ+I     I   AAS+ EKA++  ++ T ++ AA ++GKL+ ER L KGI  V V  +   +YHG+VKA+ D+ REA
Subjt:  TNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA

A7IPQ4 50S ribosomal protein L189.7e-0842.05Show/hide
Query:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE
        L +H T++ + AQVI        +AASS EK L++S+++  D  AA  IGKL+ ER L KG+ AV V  +    +HG+VKA+ +  RE
Subjt:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE

A8IAP8 50S ribosomal protein L181.9e-0844.32Show/hide
Query:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE
        L +H T+K + AQ+I         AASS EK L+SS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE
Subjt:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE

P52863 50S ribosomal protein L185.7e-0842.7Show/hide
Query:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA
        L +H T + V AQVI S  + V +AAS+ EKA++  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REA
Subjt:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA

Q89A81 50S ribosomal protein L185.7e-0840.45Show/hide
Query:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA
        L +H T+K + AQ+I S+ A+V ++AS+ EK + + ++ T ++ A+  IGK + ER L+KGI  V       Q YHG+VKA+ D+ RE+
Subjt:  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein1.1e-0932.65Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE
        R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +++++ S  D  A   IGKL+ ER +   + AV    ++ +R  GK+  VID+++E
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE

AT3G22450.1 Ribosomal L18p/L5e family protein5.1e-0430.34Show/hide
Query:  PYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSV
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  +  GK++ V+ ++
Subjt:  PYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSV

AT5G27820.1 Ribosomal L18p/L5e family protein6.8e-4177.98Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPP ++PPRL  YLKPYVLKMHFTNKFV AQVIHS TA VA +ASSQEKAL+ +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREA
        AVIDSVREA
Subjt:  AVIDSVREA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTC
TGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGTA
TTTTGGCAGAGCGACTGA
mRNA sequenceShow/hide mRNA sequence
CTCTCACTCTCTCTCGCTCCGGTTGTTTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACTTCACGCAGCCGTTTCCCATCAAGAGTATAATTGAATTGGAGTAGCCA
AGGGAGATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGAT
CCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAAT
TGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAA
GCAGTATTTTGGCAGAGCGACTGAGGAAGGGCCGAAGACCCACAAGAAGGATCCATGAAGGTCAAACACCCACAAGAAGGATCCATGAATAGTTGGTAAAGTAGAAGAAC
CTTCTTGTGGAAGAAACTAGTTGAGAACATGTTGAAGACCTAGAAGCCTGGATGCAGAAG
Protein sequenceShow/hide protein sequence
MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAV
FWQSD