; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G018440 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G018440
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRibosome biogenesis protein
Genome locationGy14Chr4:24018678..24025012
RNA-Seq ExpressionCsGy4G018440
SyntenyCsGy4G018440
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]2.09e-9496.84Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]1.42e-8695.42Show/hide
Query:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]6.49e-98100Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]4.67e-8489.24Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+I+KKK++RRRKRDLKAFDLS LSEFLPGL A KQKPSAAE KLNCKSRLKF+LKERKQM 
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRA++LHLEGTQPIEEPKKKK NKNGSKKRKEKKS ASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]1.07e-8993.67Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+ITKKK+HRRRKRDLKAFDLSTLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRA+QLHLEGTQPIEEPKKK  NKNGSKKRKEKKSKAS +PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein3.14e-98100Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like6.90e-8795.42Show/hide
Query:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like1.01e-9496.84Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A6J1E5M8 putative ribosome biogenesis protein slx9-like9.37e-7782.28Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHP FQADPL A+ LHL+ TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A6J1JDX4 putative ribosome biogenesis protein slx9-like1.33e-7682.28Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+  KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHP FQADPL A+ LHLE TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein7.1e-3351.63Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
          VL+HP FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
AT2G01640.2 unknown protein7.1e-3351.63Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
          VL+HP FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGC
TCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAAC
AAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCA
GACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTC
AAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATTTGTTCGTAATTTTCGATTTCACGCTTAAGAGTTTTAATTTCACGCCGCCTCAATCATCTCTCTCTAACTCACCTTCTCGTTTCGGGCTCTCATCTCACGCCGTCGCC
GGCGTTCAATCTCTCTCCTTCTCAGTCTTCGGTCGTCTCTCCTTCTCAGAAGTCTCTCAATCTCCCATCTTTCAATCTCCGATCGTCGCTCGCGCTCGGCTCTCTCTCAC
CATGGCGTTGCAGGACTAACCAATCGGATTATTTTTCTCAAGAAGTTTTTGATTTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCACAAGTTGTTATTAT
GGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGCTC
AAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAA
AAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGA
CCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAA
AAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAGATTAACTTGTT
TGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACCTTCATTTTGT
TTGTTTATAGATAGGAGCAGCTCCCCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTACAAAAAAAAG
AATAAAAAATCAAAAGGTCTAATGTACAAATAATTCTTCACCCTCTCTATCAAACTAGAAAGAAAAGAAGAATTGGGTGGTATAAGGTTTGTAAGTTGGTATTCTCCTCA
TTTCCTTCAATAATTATGTTTACATAGCTAATTATCACCCAATTCCAATAGTAAGTAATGGGTATGAGTTTTTAATATTTTCTTTTTTAGGCGTGTTTAGGGAAATGTCT
GATATAATATGGAGGGTTAGAGTTATGATAAACTTAGGATTATGATAAGATGTGTTTGGGGAAGGGTTAGGGACAAAATGTTATGATAAGATGTGTTCGGAGAAGAGTTA
TGTGGGTAGGGTTATGGTAGTCTTATGATAAGATATCTTTGGGGGAAGAGTTATATGGGTAGTATTACGAAATTTTTTATTTTTTAAAATTTATATTATAGATCTAATAC
ACAAATTTTTATACTTAATTTACTCCATCGTCTTGATTTTTGTAAAATAATTTGCCTAATTTTCTTTAGATGTGATGCTCATTCTCAACATTTTTTTAGTAATCCTTATT
TGCGAATAACTTATTTTTTTAAAAAATTCATATTCT
Protein sequenceShow/hide protein sequence
MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQA
DPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM