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CsGy4G018686 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G018686
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr4:24365173..24365478
RNA-Seq ExpressionCsGy4G018686
SyntenyCsGy4G018686
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.00e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCTYHMTPN+DFLINF K+DGGKVLLGDNGTC+VKG GSV IATHD MIR+LTNVRYVP+LKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]1.39e-3986.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.38e-3986.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

KAE8649708.1 hypothetical protein Csa_011950 [Cucumis sativus]4.99e-5296.55Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSLRLLIMLR
        MVSHKDIQDAWIMDSGC YHMTPNRDFLI+FHKNDGGKVLLGDNG CDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSLRLLIMLR
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSLRLLIMLR

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]1.38e-3986.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

TrEMBL top hitse value%identityAlignment
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class6.71e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

A0A5A7UB25 Putative gag-pol polyprotein6.70e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

A0A5D3BRB2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.88e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCTYHMTPN+DFLINF K+DGGKVLLGDNGTC+VKG GSV IATHD MIR+LTNVRYVP+LKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

A0A5D3CTV2 Putative polyprotein6.67e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

A0A5D3DNU1 Putative gag-pol polyprotein6.71e-4086.25Show/hide
Query:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL
        MVSH+DIQDAWIMDSGCT+HMTP+RDFL NF K DGGKVLLGDNGTCDVKG GSVQIATHD M+R+LTNVRYVPKLKR+L
Subjt:  MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCTCATAAGGATATTCAGGATGCTTGGATCATGGATTCAGGGTGCACATATCACATGACTCCTAATCGAGATTTTCTAATTAATTTTCACAAAAATGATGGGGG
AAAAGTCTTACTGGGTGATAATGGTACTTGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACAGGATGATCAGAGTCCTCACTAATGTTAGATATGTTC
CAAAACTCAAACGTAGTCTAAGACTATTGATCATGTTGAGACAGAGGTTAGAGTTGATTCAGAAGTACGACCATCAGTTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCTCATAAGGATATTCAGGATGCTTGGATCATGGATTCAGGGTGCACATATCACATGACTCCTAATCGAGATTTTCTAATTAATTTTCACAAAAATGATGGGGG
AAAAGTCTTACTGGGTGATAATGGTACTTGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACAGGATGATCAGAGTCCTCACTAATGTTAGATATGTTC
CAAAACTCAAACGTAGTCTAAGACTATTGATCATGTTGAGACAGAGGTTAGAGTTGATTCAGAAGTACGACCATCAGTTGGCTTAG
Protein sequenceShow/hide protein sequence
MVSHKDIQDAWIMDSGCTYHMTPNRDFLINFHKNDGGKVLLGDNGTCDVKGIGSVQIATHDRMIRVLTNVRYVPKLKRSLRLLIMLRQRLELIQKYDHQLA