CuGenDBv2

Gene ID	CsGy4G018687
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Gy14Chr4:24365546..24365959
RNA-Seq Expression	CsGy4G018687
Synteny	CsGy4G018687
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037675.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.19e-67

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENLNEF+KI+V+LNNISEKMSDENQA+ILLNSL ETYREVKAAIKYGRDSLTMS+VLDALKTR+LKIKKERKDGELLM +G S KK+WKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        KSSR  S  + RKCFLCHKEGHF KNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.13e-66

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M QSK L+ENL+EF+KI+VDLNNI EKMS+ENQAVILLN L E YREVKAAIKYG DSLTMS+VLDALKTR+L+IKKE KDGELLM +G S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        KS RSKSKGK RKCFLCHKEGHFKKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

KAE8649708.1 hypothetical protein Csa_011950 [Cucumis sativus]

6.07e-85

98.54

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        MNQSKGLKENLNEFKKIIVDLNNI+EKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGS+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.31e-67

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENL+EF+KIIVDLNNI EKMSDENQAVILLNSL E YREVKAAIKYGRDSL MS++LDALKTR+L+IKKE KDGELLM +  S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        +SSRSKSKGK RKCFLCHKEGH KKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

TYK25801.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.42e-70

83.21

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENL+EF+KII+DLNNISEKMSDENQAVILLNSL ETYREVKAAIKYGRDSLTMS+VLDALKTR+L++KKE K GELLM +G S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        +SSRSKSKGK RKCFLCHK GHFKKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VE98 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.47e-67

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M QSK L+ENL+EF+KI+VDLNNI EKMS+ENQAVILLN L E YREVKAAIKYG DSLTMS+VLDALKTR+L+IKKE KDGELLM +G S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        KS RSKSKGK RKCFLCHKEGHFKKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.09e-66

83.21

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENL EF+KI+VDLNNI EKMSDENQAVILLNSL ETYREVKAAIKYGRDSLTMS+VLDALKTR+L+IKKERKDGELLM +G S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        ++ RSKSK K RKCFLCHKEGHFKKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.09e-67

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENL+EF+KIIVDLNNI EKMSDENQAVILLNSL E YREVKAAIKYGRDSL MS++LDALKTR+L+IKKE KDGELLM +  S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        +SSRSKSKGK RKCFLCHKEGH KKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

A0A5D3DH66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.45e-67

81.75

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENLNEF+KI+V+LNNISEKMSDENQA+ILLNSL ETYREVKAAIKYGRDSLTMS+VLDALKTR+LKIKKERKDGELLM +G S KK+WKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        KSSR  S  + RKCFLCHKEGHF KNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

A0A5D3DQ41 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.62e-70

83.21

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE
        M+QSK L+ENL+EF+KII+DLNNISEKMSDENQAVILLNSL ETYREVKAAIKYGRDSLTMS+VLDALKTR+L++KKE K GELLM +G S+KKSWKGKE
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKE

Query:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS
        +SSRSKSKGK RKCFLCHK GHFKKNCPLNK +EAS+
Subjt:  KSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASS

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.5e-11

31.03

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Query:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKG-------GSQK
        M++      +LN F  +I  L N+  K+ +E++A++LLNSL  +Y  +   I +G+ ++ +  V  AL       KK    G+ L+T+G        S  
Subjt:  MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKG-------GSQK

Query:  KSWKGKEKSSRSKSKGKGRKCFLCHKEGHFKKNCP-LNKGKEASS
            G    S+++SK + R C+ C++ GHFK++CP   KGK  +S
Subjt:  KSWKGKEKSSRSKSKGKGRKCFLCHKEGHFKKNCP-LNKGKEASS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACCAAAGTAAAGGCTTAAAAGAGAACTTGAATGAATTTAAGAAGATTATAGTTGATCTCAATAACATCAGTGAGAAGATGTCAGATGAGAATCAAGCAGTGATTCT
TTTAAATTCATTACTTGAAACATATCGAGAGGTTAAGGCAGCTATTAAATATGGTCGGGATTCATTGACCATGAGTGTAGTGTTGGATGCCTTAAAGACTAGAAGTCTCA
AAATTAAGAAAGAACGCAAGGATGGAGAGTTACTCATGACCAAAGGAGGGAGTCAGAAAAAGAGCTGGAAAGGCAAAGAGAAGAGTTCCAGGTCGAAATCAAAGGGAAAA
GGTAGAAAGTGTTTCTTATGTCATAAAGAAGGACACTTTAAGAAAAATTGTCCTTTGAATAAGGGCAAGGAAGCATCGAGTTAG

mRNA sequence

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Protein sequence

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MNQSKGLKENLNEFKKIIVDLNNISEKMSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMTKGGSQKKSWKGKEKSSRSKSKGK
GRKCFLCHKEGHFKKNCPLNKGKEASS

CsGy4G018687 (gene) of Cucumber (Gy14) v2.1 genome