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CsGy4G019200 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G019200
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionSWIB domain-containing protein
Genome locationGy14Chr4:25395568..25399451
RNA-Seq ExpressionCsGy4G019200
SyntenyCsGy4G019200
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603170.1 hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia]6.75e-5891.09Show/hide
Query:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS
        KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN 
Subjt:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS

Query:  K
        K
Subjt:  K
KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]1.49e-104100Show/hide
Query:  SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS
        SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS
Subjt:  SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS

Query:  YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]3.32e-6193Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]8.95e-66100Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]4.05e-6296Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein7.99e-105100Show/hide
Query:  SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS
        SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS
Subjt:  SVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWS

Query:  YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  YIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A1S3BL41 upstream activation factor subunit spp271.61e-6193Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A6J1ELR1 upstream activation factor subunit UAF307.24e-5891Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A6J1HWJ0 protein TRI1 isoform X11.47e-5791.09Show/hide
Query:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS
        KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN 
Subjt:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS

Query:  K
        K
Subjt:  K
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X21.46e-5791Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp272.4e-0746.15Show/hide
Query:  VNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI
Q05024 Protein TRI16.0e-0630Show/hide
Query:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Subjt:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH
Q08747 Upstream activation factor subunit UAF305.4e-0733.77Show/hide
Query:  VNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        V L  +L   +G  +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  VNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.2e-1244.93Show/hide
Query:  LREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
        L  F G  +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
AT2G35605.1 SWIB/MDM2 domain superfamily protein5.5e-1534.31Show/hide
Query:  CTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPK
        C  +  K          ++   ++ +V +   L  F+G +++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK
Subjt:  CTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPK

Query:  NS
        ++
Subjt:  NS
AT3G03590.1 SWIB/MDM2 domain superfamily protein2.2e-1133.65Show/hide
Query:  KMATKRMKMAITDNPKK----LANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF
        K   K    A +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  + CDE LK I  GK KV   E+  L+  HF
Subjt:  KMATKRMKMAITDNPKK----LANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF

Query:  PKNS
         K +
Subjt:  PKNS
AT4G26810.1 SWIB/MDM2 domain superfamily protein5.3e-4282Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +R+K AITDNPKKL NLIDLVNLPSTLR FVG SQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
AT4G26810.2 SWIB/MDM2 domain superfamily protein5.3e-4282Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +R+K AITDNPKKL NLIDLVNLPSTLR FVG SQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGGCCACGCCACCGCTCGTCCCTTTCCGGCGCCGTTTCAAGGGGCTGCAGTCGTTCCGTTCTGTCAGCTCCATCCGGTCGCTGTCGTTTCAAATCAGGTCCGCC
GCTGGTGTCTGCGGCGTGCAAATTGTGTTGCCGTCAGAAGCTGCTGCCGGTTGCCGAAGTTTTGAATTTTGGTGGAGGAACAAACTTGTTGTGCACAAAAATGGCAACAA
AACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCAAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACATTCCCAAATTTCT
CGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGATCCCACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATACTGCT
GGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTCCCCAAAAATTCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGGCCACGCCACCGCTCGTCCCTTTCCGGCGCCGTTTCAAGGGGCTGCAGTCGTTCCGTTCTGTCAGCTCCATCCGGTCGCTGTCGTTTCAAATCAGGTCCGCC
GCTGGTGTCTGCGGCGTGCAAATTGTGTTGCCGTCAGAAGCTGCTGCCGGTTGCCGAAGTTTTGAATTTTGGTGGAGGAACAAACTTGTTGTGCACAAAAATGGCAACAA
AACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCAAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACATTCCCAAATTTCT
CGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGATCCCACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATACTGCT
GGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTCCCCAAAAATTCCAAGTGA
Protein sequenceShow/hide protein sequence
MGGPRHRSSLSGAVSRGCSRSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQIS
RLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK