; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy4G020010 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G020010
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationGy14Chr4:26870315..26880404
RNA-Seq ExpressionCsGy4G020010
SyntenyCsGy4G020010
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144641.1 uncharacterized protein LOC101218072 [Cucumis sativus]1.18e-98100Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP
        FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP

XP_008444284.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo]1.22e-9194.81Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAITMGNLPDTRSS +SSQP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]1.24e-8390.6Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSH
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPD    H
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSH

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]2.49e-8393.06Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPD
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPD

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]1.79e-8293.01Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 75.90e-9294.81Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAITMGNLPDTRSS +SSQP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 72.43e-7079.38Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTT-------ELDQL
        MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TT       ELDQL
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTT-------ELDQL

Query:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ
        LE APFPFIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAI+MGN PDT SS SSSQ
Subjt:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 73.50e-7383.01Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAI+MGN PDT SS SSSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 71.66e-7179.22Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHS EK+ DD SAN+DS VSAELE SI+ NGD++E ND  N NLG+SNALANGLSSML+NI+RDFDSKADDTLKSQ+ LS SLDRLT+ELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP
        FIMQHA RIS+VRKRVLSLNSILR++QRR+DNIDR I+M NLPD RSS SSSQP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 73.50e-7382.35Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ DD  ANEDS+ S ELETSI+ NG+L+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAI+MGN PDT SS S SQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related5.7e-2748.92Show/hide
Query:  ANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV
        ++ D   SA+  TS   +   ++G        G   A+A GLS+ML ++I+DFDSKA DTL SQ+ LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V
Subjt:  ANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV

Query:  RKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSS
        ++RV SLN +L+++QRR+DNID  ++     +  SS ++
Subjt:  RKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAA
TGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTA
AAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCT
AATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGATACTCGTTC
CTCTCACAGTTCCTCACAGCCTTAA
mRNA sequenceShow/hide mRNA sequence
CTTTGGATTGTTTGTTAAAAAAAAAAAAAAAAACTCTCCCTCCCAGCTCTCTCGCCTCGTCTGGCCACATAGCTGCCGCTGCACCTCCGTCCGACGTTCGCCCAACACCG
CAGTCGCACGCTGGTCGTTTTCCATCTCCGCCGGAGTCGCACATCGGGACAGAATTGAAACAATATTATCCCAGACATCATTTTATCTGAATTGGGCTACAAGCTTACGA
CGGACCAATTAGTGAATCCTTCTGGACTCATACCACAAGTTTTGCGAGTCCCTGAACGCAGCAAGTGTGAATTTAGTTGAGATGCACAGTCCGGAGAAATTGGATGACGA
TTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAATGATAGTGAAAATAAGAACTTAGGAAATT
CTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTAAAAGCCAGAACCATCTTTCATCTTCCCTT
GACCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCTAATGTAAGAAAGAGAGTTTTGTCACTGAA
TTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGATACTCGTTCCTCTCACAGTTCCTCACAGCCTTAAGATT
GTACATACTTGCAAGTCCTCTCTCTCTTCTACATGCACATTATTTATGATAACGTATAGGGTGGGAAATGCAAGTTCATGTCTACTAAGCTATGCTCATATTAACTAACA
ATCTTGAATATACTACTTGCTTAAATTATACATTTGTAAGTTTTAGTACCCTCCTACACCATATTTACTTGAGTTGTGAGCGAGCTTTTTTCCTTACAAATTGTGTCCGT
TCATACAAATTCTTTTATTTAGTAAGAGGAGAAAGTTGGGTAAAATAAGAATTTTCATTCTAATTCTTGTAGAATAAAATGCATTTATGATAAGCATGCAAAGCAAACCA
TTGTTGGGTTGTAAAGACGATTCTTGCCTAAGAA
Protein sequenceShow/hide protein sequence
MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRIS
NVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPDTRSSHSSSQP