CuGenDBv2

Gene ID	CsGy4G020093
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Beta-galactosidase
Genome location	Gy14Chr4:26984160..26984510
RNA-Seq Expression	CsGy4G020093
Synteny	CsGy4G020093
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025289.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.70e-54

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT+ GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

KAA0034029.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.97e-55

82.3

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ F LI+SDIWGPSKVTTS GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

KAA0041352.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.09e-57

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YMKY+FPHLF K+DVSSLSCD+CI AKQH+V FPSQPYK TQ FTLI+SD+WGPSKVTTS GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTIE
Subjt:  VFSIFQNFYHTIE

KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.52e-54

78.15

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YMKY+FPHLF K+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT  GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIEHSSMQK
        V +IFQNFYHTIE    +K
Subjt:  VFSIFQNFYHTIEHSSMQK

TYK07380.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.70e-54

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT+ GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJ13 Beta-galactosidase

1.31e-54

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT+ GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

A0A5A7SXY5 Beta-galactosidase

9.53e-56

82.3

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ F LI+SDIWGPSKVTTS GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

A0A5A7TD25 Beta-galactosidase

1.01e-57

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YMKY+FPHLF K+DVSSLSCD+CI AKQH+V FPSQPYK TQ FTLI+SD+WGPSKVTTS GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTIE
Subjt:  VFSIFQNFYHTIE

A0A5A7VD20 Beta-galactosidase

7.34e-55

78.15

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YMKY+FPHLF K+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT  GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIEHSSMQK
        V +IFQNFYHTIE    +K
Subjt:  VFSIFQNFYHTIEHSSMQK

A0A5D3C7S0 Beta-galactosidase

1.31e-54

81.42

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Query:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD
        ML HFRLGHPNF YM+Y+FPHLFSK+DVSSLSCD+CIRAKQH+VSFPSQPYK TQ FTLI+SD+WGPSKVTT+ GKRWFVTFIDD+TRL    LITDKS+
Subjt:  MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRL----LITDKSD

Query:  VFSIFQNFYHTIE
        V SIFQNFYHTI+
Subjt:  VFSIFQNFYHTIE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.0e-06

31.09

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Query:  HFRLGHPNFKYM----------KYIF--PHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKS--TQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTR-
        +FRL H  F ++          K +F    L + +++S   C+ C+  KQ ++ F     K+   +   +++SD+ GP    T   K +FV F+D +T  
Subjt:  HFRLGHPNFKYM----------KYIF--PHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKS--TQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTR-

Query:  ---LLITDKSDVFSIFQNF
            LI  KSDVFS+FQ+F
Subjt:  ---LLITDKSDVFSIFQNF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-13

34.17

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Query:  LCHFRLGHPNFKYMKYIF-PHLFSKVDVSSLS-CDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRLL----ITDKS
        L H R+GH + K ++ +    L S    +++  CD C+  KQH+VSF +   +   +  L+YSD+ GP ++ +  G ++FVTFIDD +R L    +  K 
Subjt:  LCHFRLGHPNFKYMKYIF-PHLFSKVDVSSLS-CDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRLL----ITDKS

Query:  DVFSIFQNFYHTIEHSSMQK
         VF +FQ F+  +E  + +K
Subjt:  DVFSIFQNFYHTIEHSSMQK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGTGTCATTTTCGGTTGGGCCACCCAAACTTTAAATATATGAAGTATATATTTCCCCATCTCTTCTCTAAAGTTGATGTCTCCTCTTTATCTTGTGATATTTGTAT
ACGGGCCAAACAACATCAGGTCTCCTTCCCCTCACAACCATATAAATCAACCCAACTGTTCACCCTTATCTATAGCGACATTTGGGGTCCATCCAAGGTCACTACCTCCT
TTGGGAAACGGTGGTTTGTGACTTTTATTGATGATTATACTCGTCTTCTTATCACTGATAAATCTGACGTTTTCTCTATTTTCCAGAACTTCTATCACACTATTGAACAC
AGTTCAATGCAAAAATTTTGA

mRNA sequence

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Protein sequence

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MLCHFRLGHPNFKYMKYIFPHLFSKVDVSSLSCDICIRAKQHQVSFPSQPYKSTQLFTLIYSDIWGPSKVTTSFGKRWFVTFIDDYTRLLITDKSDVFSIFQNFYHTIEH
SSMQKF

CsGy4G020093 (gene) of Cucumber (Gy14) v2.1 genome