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CsGy4G020630 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G020630
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationGy14Chr4:27448985..27451942
RNA-Seq ExpressionCsGy4G020630
SyntenyCsGy4G020630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054676.1 uncharacterized protein E6C27_scaffold24G004970 [Cucumis melo var. makuwa]4.53e-7456.57Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        A LSKTI+NVGPFYP+LIRE IVNL S FN+PSS N+Q+VHI G +F+IS  IIN  LGNNV SN +PS PSN+ L  +LS  TLS WSVN IPV+SL++
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHM-------PQGLI------------------------PKILSLSYRLF
        KYVILHKIG+ NWF SS  SSVS  LG  LYQI     + VGLFIY  LLRH+       P  L+                        PK LSLSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHM-------PQGLI------------------------PKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        Q SHVPDIEH M  ++ PR FD E +D   E      DLASRIINTL AES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

KAE8649806.1 hypothetical protein Csa_012150 [Cucumis sativus]2.20e-185100Show/hide
Query:  MVTVSAQGCSTVLPLSDATPCVDSQCYFLCSLNYHLLPGKSATCAAGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIIN
        MVTVSAQGCSTVLPLSDATPCVDSQCYFLCSLNYHLLPGKSATCAAGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIIN
Subjt:  MVTVSAQGCSTVLPLSDATPCVDSQCYFLCSLNYHLLPGKSATCAAGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIIN

Query:  SLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSIKYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ
        SLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSIKYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ
Subjt:  SLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSIKYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ

Query:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
Subjt:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

TYK29236.1 uncharacterized protein E5676_scaffold1228G00270 [Cucumis melo var. makuwa]1.23e-7151Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LIRE IVNL   FNDPSS+++  VHIRG +F IS A+IN  LGN V  +C+PS P+   L ++L G TLS W VN IP  +LS+
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPS H SS+S  LG  LYQI     VD G FIY QLLRH+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSH+PDI+H + P + P  F+    D  AE  +   +LA+RIIN+LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

XP_008462856.1 PREDICTED: uncharacterized protein LOC103501137 [Cucumis melo]1.73e-7352.99Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LIRE IVNL   FNDPSS N+Q VHIRG +F IS A+IN  LGN V  + + S P+ + L ++LSG TLS W VN IPV +LS+
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPSSH SS+SA L   LYQI     VD G FIY QLL H+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSHVPDI+H + P   PR FD    D +AE  +   +LA+RIIN+LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

XP_008465605.1 PREDICTED: uncharacterized protein LOC103503245 [Cucumis melo]3.75e-7151Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LI+E IVNL   FNDPSS ++Q VHIRG +F +SSA+IN  LGN V  +C+PS P+ + L ++LS  TL  W VN I   +L++
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPSSH SS+SA L   LYQI     VD+G FIY QLLRH+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSHVPDI+H + P + PR FD    D + E  +   +LA+RIIN LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

TrEMBL top hitse value%identityAlignment
A0A1S3CHW3 uncharacterized protein LOC1035011378.39e-7452.99Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LIRE IVNL   FNDPSS N+Q VHIRG +F IS A+IN  LGN V  + + S P+ + L ++LSG TLS W VN IPV +LS+
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPSSH SS+SA L   LYQI     VD G FIY QLL H+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSHVPDI+H + P   PR FD    D +AE  +   +LA+RIIN+LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A1S3CPM5 uncharacterized protein LOC1035032451.82e-7151Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LI+E IVNL   FNDPSS ++Q VHIRG +F +SSA+IN  LGN V  +C+PS P+ + L ++LS  TL  W VN I   +L++
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPSSH SS+SA L   LYQI     VD+G FIY QLLRH+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSHVPDI+H + P + PR FD    D + E  +   +LA+RIIN LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5D3CAN5 Uncharacterized protein2.20e-7456.57Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        A LSKTI+NVGPFYP+LIRE IVNL S FN+PSS N+Q+VHI G +F+IS  IIN  LGNNV SN +PS PSN+ L  +LS  TLS WSVN IPV+SL++
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHM-------PQGLI------------------------PKILSLSYRLF
        KYVILHKIG+ NWF SS  SSVS  LG  LYQI     + VGLFIY  LLRH+       P  L+                        PK LSLSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHM-------PQGLI------------------------PKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        Q SHVPDIEH M  ++ PR FD E +D   E      DLASRIINTL AES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5D3DQA5 Uncharacterized protein1.99e-7151Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LI+E IVNL   FNDPSS ++Q VHIRG +F +SSA+IN  LGN V  +C+PS P+ + L ++LS  TL  W VN I   +L++
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPSSH SS+SA L   LYQI     VD+G FIY QLLRH+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSHVPDI+H + P + PR FD    D + E  +   +LA+RIIN LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5D3E001 Uncharacterized protein5.97e-7251Show/hide
Query:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI
        AGL KTI+NVGPFYP+LIRE IVNL   FNDPSS+++  VHIRG +F IS A+IN  LGN V  +C+PS P+   L ++L G TLS W VN IP  +LS+
Subjt:  AGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSNCAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSI

Query:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF
        KY ILHKIGI NWFPS H SS+S  LG  LYQI     VD G FIY QLLRH+                                 G  PK ++LSYRLF
Subjt:  KYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQ-------------------------------GLIPKILSLSYRLF

Query:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        QGSH+PDI+H + P + P  F+    D  AE  +   +LA+RIIN+LTAES
Subjt:  QGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACGGTAAGCGCCCAAGGATGCTCGACTGTTTTGCCGTTGTCTGATGCAACACCTTGCGTCGATTCACAATGTTATTTCTTGTGTAGTCTTAATTATCATCTATT
GCCAGGAAAGTCTGCAACATGCGCTGCTGGCCTCTCCAAAACGATTGCTAATGTGGGTCCTTTCTATCCAAGATTAATTAGAGAACTCATTGTGAACCTTCGTTCTTACT
TTAATGATCCTAGTAGCTCAAATTTTCAGCTTGTGCATATACGAGGGTCTCAATTCAGAATTTCTTCAGCTATTATTAATAGTTTACTTGGGAATAATGTTTCTTCTAAC
TGTGCCCCATCTCTGCCTTCAAATGATGAATTAACTTCGATTTTATCAGGTAGTACTTTATCAGTCTGGTCTGTTAATCGTATTCCAGTTGTCTCTTTGAGTATAAAATA
TGTTATATTACATAAGATAGGCATTGTCAACTGGTTCCCATCATCTCATGTTTCAAGTGTTTCAGCTACCTTGGGTATGCTTTTGTATCAAATTGGTATGGGTTTCTTAG
TCGATGTTGGTTTGTTCATCTATACTCAGCTGTTAAGACATATGCCCCAGGGCTTGATCCCAAAGATATTATCACTCAGTTATAGACTATTTCAGGGATCACATGTCCCT
GATATAGAGCATTCTATGCGGCCTGCCAAGACTCCTAGAACTTTTGACTTCGAAGGTGTGGATGTAACTGCGGAAGATATTCATACTCCTCATGATTTGGCATCGCGGAT
TATTAATACTCTCACTGCTGAATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACGGTAAGCGCCCAAGGATGCTCGACTGTTTTGCCGTTGTCTGATGCAACACCTTGCGTCGATTCACAATGTTATTTCTTGTGTAGTCTTAATTATCATCTATT
GCCAGGAAAGTCTGCAACATGCGCTGCTGGCCTCTCCAAAACGATTGCTAATGTGGGTCCTTTCTATCCAAGATTAATTAGAGAACTCATTGTGAACCTTCGTTCTTACT
TTAATGATCCTAGTAGCTCAAATTTTCAGCTTGTGCATATACGAGGGTCTCAATTCAGAATTTCTTCAGCTATTATTAATAGTTTACTTGGGAATAATGTTTCTTCTAAC
TGTGCCCCATCTCTGCCTTCAAATGATGAATTAACTTCGATTTTATCAGGTAGTACTTTATCAGTCTGGTCTGTTAATCGTATTCCAGTTGTCTCTTTGAGTATAAAATA
TGTTATATTACATAAGATAGGCATTGTCAACTGGTTCCCATCATCTCATGTTTCAAGTGTTTCAGCTACCTTGGGTATGCTTTTGTATCAAATTGGTATGGGTTTCTTAG
TCGATGTTGGTTTGTTCATCTATACTCAGCTGTTAAGACATATGCCCCAGGGCTTGATCCCAAAGATATTATCACTCAGTTATAGACTATTTCAGGGATCACATGTCCCT
GATATAGAGCATTCTATGCGGCCTGCCAAGACTCCTAGAACTTTTGACTTCGAAGGTGTGGATGTAACTGCGGAAGATATTCATACTCCTCATGATTTGGCATCGCGGAT
TATTAATACTCTCACTGCTGAATCTTGA
Protein sequenceShow/hide protein sequence
MVTVSAQGCSTVLPLSDATPCVDSQCYFLCSLNYHLLPGKSATCAAGLSKTIANVGPFYPRLIRELIVNLRSYFNDPSSSNFQLVHIRGSQFRISSAIINSLLGNNVSSN
CAPSLPSNDELTSILSGSTLSVWSVNRIPVVSLSIKYVILHKIGIVNWFPSSHVSSVSATLGMLLYQIGMGFLVDVGLFIYTQLLRHMPQGLIPKILSLSYRLFQGSHVP
DIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES