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CsGy4G020800 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G020800
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L18a-like protein
Genome locationGy14Chr4:27574405..27577910
RNA-Seq ExpressionCsGy4G020800
SyntenyCsGy4G020800
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]4.14e-112100Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]3.40e-10292.16Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_022936871.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]3.51e-8883.01Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]1.01e-8783.66Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q+YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]6.34e-9890.2Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HP YGTFQGVANYPPVGF  PTR PGV DSDDPSQYQ YAHGYQAVPGY IVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVAC IAAV+ATVAIIFGATREAD W
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein2.01e-112100Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein1.65e-10292.16Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein1.65e-10292.16Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein1.70e-8883.01Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein4.87e-8883.66Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q+YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein7.7e-2946.76Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        ++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family1.5e-4354.37Show/hide
Query:  EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREPRLPCCGIGIGW
        E+DKS           E  + H  YGTFQGV+NYPP        GF  P+  PGV DS  P    +YAHGYQ VP +  + EGRPVR+ RLPCCGIG+GW
Subjt:  EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREPRLPCCGIGIGW

Query:  FLFIIGFFLAAIPWYAGAILIICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FLFI+GFFL AIPWY G  +++ G R+DYREKPGY+AC+IAA++AT+A+I G ++ AD W
Subjt:  FLFIIGFFLAAIPWYAGAILIICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G29970.1 60S ribosomal protein L18A-15.5e-3046.76Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        ++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G29970.2 60S ribosomal protein L18A-11.8e-2550Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIA
        ++   VD+REK GYVACSIA
Subjt:  IICGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-17.7e-2435.91Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFL------------------
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFL                  
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFL------------------

Query:  ------------------------FIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
                                FI+GF    IPWY GA +++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  ------------------------FIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G53560.1 Ribosomal protein L18ae family3.2e-3851.82Show/hide
Query:  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILII
        YGTFQGV  YPP  + HP     + G+P    P    H       Y   +Q V GY + +GRP R+ RLPCCG+G+GWFLFIIGF L AIPWY G  +++
Subjt:  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILII

Query:  CGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        C R+D REKPGYVAC+IAAV+AT+ I+FG      VW
Subjt:  CGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCC
TCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCT
GGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGAC
AAGGGAAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCC
TCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCT
GGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGAC
AAGGGAAGCTGATGTCTGGTAA
Protein sequenceShow/hide protein sequence
MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYA
GAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW