CuGenDBv2

Gene ID	CsGy4G024800
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L39
Genome location	Gy14Chr4:30426935..30428757
RNA-Seq Expression	CsGy4G024800
Synteny	CsGy4G024800
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

EXB38641.1 60S ribosomal protein L39 [Morus notabilis]

1.02e-30

98.11

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Query:  NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        N+QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAA0050937.1 60S ribosomal protein L39 [Cucumis melo var. makuwa]

1.16e-29

100

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Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAB1204673.1 60S ribosomal protein L39-1 [Morella rubra]

1.56e-30

91.23

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Query:  LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + Y N QPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.56e-29

77.78

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Query:  LRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

2.48e-29

72.73

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Query:  MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        ++   +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A2I0K803 Uncharacterized protein

2.00e-29

94.44

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Query:  SNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        S  QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  SNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A5A7U961 60S ribosomal protein L39

5.63e-30

100

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Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6A1UWI8 60S ribosomal protein L39-1

7.55e-31

91.23

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Query:  LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + Y N QPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

1.20e-29

72.73

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Query:  MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        ++   +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

W9R5P2 60S ribosomal protein L39

4.93e-31

98.11

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Query:  NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        N+QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

1.6e-21

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

3.2e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

3.2e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

9.4e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

3.2e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

3.4e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

3.7e-21

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

1.1e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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ATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTATTCCAATACACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAG
GCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA

mRNA sequence

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TATCGATTACCCTTCTCAAGGGAGGGTATAAAGGTTCTTCGCTCCTGATAGGGTTTTTGTTTATCTCGCCGTCGATCGCCGGAACCCGAAGATGGTACGTATCGTTATTC
GACTCTGAACTTTTTCTCTACGTAAATCTGGTGCTATTCGTTCTTCTCTAATTGATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTATTCCAATAC
ACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGAT
ACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTCCTAACTTCAATGTTCATTTAGCTTGATTTTGTTAAGTTTCAGAACTTGA
ACTTTCTTAAGGATCTACATTTGTATTTCCGCAACTGAAATTTAGTTTATCGGAAACTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAA
TTTTCCATCAACTTTTATGTCTTTAGAGTAGCATTTTTGGCGAACCTTTACGGCATTTACTTCTTCATTTCTACGACATTTATCAAAGTTGGTGATTCTTGACAAAATTC
CATTTAAATTTACATATCACAATTCTCATCTTTTTAGGAATAGATATAATCATATTTTGATTTAGCTTTATATATATTTAATCAGTGAAATCTGTTCATAAAAGTGTGTA
GCCAAAGTATACTTGAACATTCACAATTAACCTTCACATACATTGGAAGATTATCAAGAAATTCCAATTAGCTTCTCCTAGAACTTAGAAAAGACTTTAAATATACATTC
ATATGATAATCATCCTATACACCTACAACCTTTGCTACTTCTGAAAGAAAGACTTTATGAGATACCCTTCTATAGAGTACTCATATTTCTATATATTCTCTAGGTTCTAT
ATTTCTATCATTGAATTCTTAGTACTTTCATCTGTAGTTGATCTAAACAGACTAGTCTTTACGTAACGCCAAAAAACAAGGTTCTACATGTGTGTCCGTGAGTTCTGAGT
ACTTCCATCTATAGTTGATCTAAACAGACCAGTCTTCATTACAAAAGTGGGTAGAGGTATAGAACTTGGTGGTGGTGAGATACCAAAGGTAGAGGTTCCGGCGTAGAAAA
TTCGCTCTTTTGTATTACAGAGTGAACTTGTCACTTGAAACTTAACCACCTTGGCCTTGTTTAGGCTTTGTTTTTGTTTGTTTGGAGGTCTGCAAGGTATGGCGTTCTTA
GAACCATCTTGAGGACAACGAAGAACGTGGATAGATGAATCCTTTGAGTTAATTTCCATGGTGTGGAGTGTAAAGCAAATAATGAATGCTTCAATAGAAAGGAAGAGAAT
AATTTGTTTCATTAAAGAAGAATTAGTCTCTTGGCTTTATAGGGGGATATGAGAATTGGATTTGGATTGTTGAAGGCGGTTTTATTTAAAATATAAATTATAAGTTATTT
ATAGATAAATGGATTTGGTATTTCTAATAGGAAAAAGAAATTTATATTTGGAATTTTTAATAGGAAAATATGTATGTGTAATAGGTTTTTTAATGATTTGATTTGCTATA
AAAATTTATTTCGTATTTTAAACCGCATGCATTGTGAAAATTAATAGGTTTAATTAATCGCTAAATTTTGAAGTT

Protein sequence

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MIVELLRVCNSIFLFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

CsGy4G024800 (gene) of Cucumber (Gy14) v2.1 genome