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CsGy4G024885 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy4G024885
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA ligase
Genome locationGy14Chr4:30486091..30487460
RNA-Seq ExpressionCsGy4G024885
SyntenyCsGy4G024885
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]3.39e-4871.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP
KGN55462.1 hypothetical protein Csa_012581 [Cucumis sativus]5.56e-87100Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
        MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI

Query:  RDFTSRLPASPPHVNLMRF
        RDFTSRLPASPPHVNLMRF
Subjt:  RDFTSRLPASPPHVNLMRF
XP_008452891.1 PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo]1.13e-6886.78Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPASPPH-VNLMRF
        IRDFTSRLPASPP  VNLMRF
Subjt:  IRDFTSRLPASPPH-VNLMRF
XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]3.50e-4871.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP
XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]3.39e-4871.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP
TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein2.69e-87100Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
        MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI

Query:  RDFTSRLPASPPHVNLMRF
        RDFTSRLPASPPHVNLMRF
Subjt:  RDFTSRLPASPPHVNLMRF
A0A1S3BVQ9 uncharacterized protein LOC1034937785.45e-6986.78Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPASPPH-VNLMRF
        IRDFTSRLPASPP  VNLMRF
Subjt:  IRDFTSRLPASPPH-VNLMRF
A0A5A7VBS3 DNA ligase5.45e-6986.78Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPASPPH-VNLMRF
        IRDFTSRLPASPP  VNLMRF
Subjt:  IRDFTSRLPASPPH-VNLMRF
A0A6J1FP70 uncharacterized protein LOC1114460221.69e-4871.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP
A0A6J1J1H3 uncharacterized protein LOC1114804176.88e-4869.83Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PE+RGMCR+LVARI    RRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)6.9e-0452.78Show/hide
Query:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPA
        FRYD  SY+LNF+D  +   +DDEFP RD++ R  A
Subjt:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPA
AT5G11070.1 unknown protein2.9e-1039.67Show/hide
Query:  HKLKSPISCFRPDH--DPE---LHDNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSR----------RRYHHST----DFRYDPSSYALNFEDE
        H+++SPI C   +   +PE   +     +P SP   LKS   +L ELR  CR + +RI    R            +HHS     DF YDP SYALNFED 
Subjt:  HKLKSPISCFRPDH--DPE---LHDNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSR----------RRYHHST----DFRYDPSSYALNFEDE

Query:  QLRYDDEFPIRDFTSRLPASP
         +R DD+    +FT+RLP SP
Subjt:  QLRYDDEFPIRDFTSRLPASP
AT5G35090.1 unknown protein3.2e-0936.03Show/hide
Query:  SFTHKLKSPI---SCFRP----DHDPELHDNPSSP--TSPALKS------------MTSDLPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDP
        S   KLKS      CFR      HD    D PSSP  T  + +S            +T  L +    C+SL+ R       +    +    H+ DF YDP
Subjt:  SFTHKLKSPI---SCFRP----DHDPELHDNPSSP--TSPALKS------------MTSDLPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDP

Query:  SSYALNF----EDEQLRYDDEFPIRDFTSRLPASPP
        SSYALNF    ED+ +   D FP+R+F++RLP SPP
Subjt:  SSYALNF----EDEQLRYDDEFPIRDFTSRLPASPP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTTCTCCAAC
ATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCCA
CTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCA
CCACCGCACGTAAATCTCATGCGATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTCTCCCAATAATTCTCTATAAATATCTCTTCTATTTCTCTCCCCCATTTCCATCATCACTGCTTAACTCTCACCTCTCATCCATTTTTCATTACAAAACTTCCCATCTT
CGTCACCATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTT
CTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCAT
CACTCCACTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCC
GGCGTCACCACCGCACGTAAATCTCATGCGATTTTGAAACCATGGGGTTGGGGATCTTCAGGGAGTCTCTACCCATTGATTCTAACTGTAATTTGCAATTTGCTAAAGGT
GTTATTCGTAGAGCTAAATGTATAGATATCTAAAAAGCTCTCTAATTAATTATTAATTGTATATTCCTTCTATTGTTATTACTAATTTACTGATTATGTTTGCTTCTAAT
TTCGTTTAATTTCAATCAACCTTAGATTTAGTTAAATTACTGTTATGTGTACTGATTATTGTTGGTTATGATGAACTAAAAGATTTGGAAAAAGAGGACTAATCAATGCA
GTAGTCATATAACTGAATTAAACCTCTTTAATTGATGAATTTGATAATGTTAATAAATATGTACAAACTATTAGTTTCTTCATTTTTCCACCAAATTCACAAAATCCAAA
CTTTTACAACTAATCAATATTTGTTCAAAAAAGTTTACAAACACTTAGAAAGTGCTCATATAGTGGATTATTAACTTAATCATTGTTATTAATACAGTTGAACATAAACT
CTAAACTTTAATTTTTTTGTTTAGTAGGTTGATGAATTTCGGAAGAGGGAGTCGTGCATGTCGAAGTAGATAAAAAAGAAAGAGAAAGAGAGAACGAGGGGTATGAGAAA
GTAAATAAAGAGAAAAAAAACTACATGCATTGTTGATATGCATAGGAGGCAATCAACGAGTGACAACTATTGATATATGTTGAATACATATATACATTTAGGAGGCAATG
TTTGCCAAGCTTCCTTGTCCCCATGTCCTAAGTTCTTGCAATAGTTCATCGTCCATTTTGTTATTTTAAAAGAAAAAAAAGACCTATTAATTTACATAAATTATTTATAA
ATTTTAAATTAATGAATTAGTTTTCACTAAAAAAATTCATCAAAATGACT
Protein sequenceShow/hide protein sequence
MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS
PPHVNLMRF