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CsGy5G000045 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G000045
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPre-mRNA-splicing factor SF2
Genome locationGy14Chr5:36252..36557
RNA-Seq ExpressionCsGy5G000045
SyntenyCsGy5G000045
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]3.70e-49100Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

KAF8042803.1 hypothetical protein BT93_A1205 [Corymbia citriodora subsp. variegata]6.88e-2052.27Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MTSA TNMS A+IHRD+EREWE+  GVMGI   N    SL E+L   +F       K  F   I LEHLGANEQW+  +     IALL
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]2.56e-70100Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG
        MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG

Query:  E
        E
Subjt:  E

PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]8.06e-2356.38Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV
        M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K     ++    L       CGARLTSRIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV

TYK05915.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]4.07e-52100Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

TrEMBL top hitse value%identityAlignment
A0A059DF44 Uncharacterized protein (Fragment)4.91e-2052.69Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV
        MTSA TNMS A+I RD+EREWE+  GVMGI   N    SL E+L   +        K  F   I LEHLGANEQW+  +     IALLVCFIV
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV

A0A0A0KJQ0 Uncharacterized protein1.24e-70100Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG
        MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFG

Query:  E
        E
Subjt:  E

A0A2P5EDP3 Uncharacterized protein (Fragment)3.90e-2356.38Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV
        M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K     ++    L       CGARLTSRIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV

A0A5A7TGZ1 Pre-mRNA-splicing factor SF21.79e-49100Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

A0A5D3C3G3 Pre-mRNA-splicing factor SF21.97e-52100Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA
Protein sequenceShow/hide protein sequence
MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE