CuGenDBv2

Gene ID	CsGy5G001340
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Mitochondrial import inner membrane translocase subunit
Genome location	Gy14Chr5:807168..810408
RNA-Seq Expression	CsGy5G001340
Synteny	CsGy5G001340
Gene Ontology terms	GO:0045039 - protein insertion into mitochondrial inner membrane (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0042719 - mitochondrial intermembrane space protein transporter complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR004217 - Tim10-like IPR035427 - Tim10-like domain superfamily IPR039238 - Mitochondrial import inner membrane translocase subunit Tim8/13

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004145880.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus]

1.62e-53

100

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

XP_022159838.1 mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia]

7.46e-50

94.25

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

XP_022929052.1 mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata]

6.38e-51

96.55

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

XP_023520535.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo subsp. pepo]

1.06e-49

95.4

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSESSCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

XP_038906948.1 mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida]

2.70e-52

98.85

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK66 Mitochondrial import inner membrane translocase subunit

7.86e-54

100

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

A0A1S3AUN2 Mitochondrial import inner membrane translocase subunit

7.86e-54

100

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

A0A6J1DZZ6 Mitochondrial import inner membrane translocase subunit

3.61e-50

94.25

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

A0A6J1ELP2 Mitochondrial import inner membrane translocase subunit

3.09e-51

96.55

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

A0A6J1I4K9 Mitochondrial import inner membrane translocase subunit

3.09e-51

96.55

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
        MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEAT IVSRALFKTPH
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

SwissProt top hits

e value

%identity

Alignment

Q6DGJ3 Mitochondrial import inner membrane translocase subunit Tim13

6.4e-12

45.78

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Query:  MDSFSS--PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRA
        M+ F S   S  SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  SE  CI+ CM+RY++A + VSRA
Subjt:  MDSFSS--PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRA

Q8AVK1 Mitochondrial import inner membrane translocase subunit Tim13-B

3.8e-12

46.43

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Query:  MDSFSSPSS---GSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRA
        MD F S  S    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  C++ CM+RY++A +IVSRA
Subjt:  MDSFSSPSS---GSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRA

Q9VTN3 Mitochondrial import inner membrane translocase subunit Tim13

3.2e-11

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Query:  EFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSR
        E  +Q+K Q+A A A+E L  +  KCF KCI KPG SL  +E  CIS+CM+R+++A ++VSR
Subjt:  EFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSR

Q9XGY5 Mitochondrial import inner membrane translocase subunit Tim13

3.9e-25

74.12

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Query:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKT
        MDSFSS SSGS P   A    DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSESSCISRC++RYIEAT IVSRALF +
Subjt:  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKT

Q9XH48 Mitochondrial import inner membrane translocase subunit TIM13

3.0e-25

69.05

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Query:  MDSFSS-PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALF
        MDS+SS P  GS    S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+SR+LF
Subjt:  MDSFSS-PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALF

Arabidopsis top hits

e value

%identity

Alignment

AT1G61570.1 translocase of the inner mitochondrial membrane 13

2.1e-26

69.05

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Query:  MDSFSS-PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALF
        MDS+SS P  GS    S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+SR+LF
Subjt:  MDSFSS-PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALF

AT5G50810.1 translocase inner membrane subunit 8

4.1e-06

34.67

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Query:  PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATSIVSR
        PS  ++P     E    L  +  +A   E +  +   C+DKCIT  PGS  S SESSC++ C +RY++ + I+ +
Subjt:  PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATSIVSR

Sequences

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CDS sequence

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ATGGATTCGTTTTCATCGCCTTCAAGCGGCTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAG
TTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCTTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGT
TATATTGAAGCAACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTAA

mRNA sequence

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CTTAATTGCTAACTCATATATGGAATGCCAATTAAGGGTTTAGTCAAAGAAAATTTATTGACCAAATGTGGATTGAAGAGTAAAGAAGGACACCAAAGGCGCGCT
CGCCCTAATCGCATTGCCATAGACATCGCCGCCTGCCCTCGAACACAAGATCAGCTCTACGGCGCAGCGCAAACGAATACACGAAGCGGCTGTGGTTTATAGGGT
TTTACAACCACCGAACAAATGGATTCGTTTTCATCGCCTTCAAGCGGCTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCT
CAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCTTAAGTGGAAGTGAGAGCAGTTGCATC
TCTAGGTGCATGGAGCGTTATATTGAAGCAACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTAAAGGAACAGGTTTTCCTGAGACATTATGAGGTCG
AGGTATCTTCAGCAACCACCAACCTACATTATTTTTCTTGGTTAGATATTTGTTTTCCAGCTCTAAAATCTTTCTTGAGGAGACAAGTTTTTGATCTGTGCCCCA
TAGATAATATCGGTATCACGTTCTTTATTTGCTTAACATGTGAACTTCGGGTCATTTAAACTCTCATTTCTTCTGATTTAACATGCTTCAATTGGGTTTATTACC
ATTTGGGGGTTCATTGTTCATCTATTAATGCAAACTGCTCAACCTAGAATAAATAGTGTACTCTTCAAAATTTTGAAGTTGAGTTAATCTGTTGCCTTGATTTTT
ATACACTTTTCCAGCTTCTCATAGAATAAATAGTGTACTCTTCAAAATTTTGAA

Protein sequence

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MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

CsGy5G001340 (gene) of Cucumber (Gy14) v2.1 genome