CuGenDBv2

Gene ID	CsGy5G004080
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	L-lactate dehydrogenase
Genome location	Gy14Chr5:2739673..2739969
RNA-Seq Expression	CsGy5G004080
Synteny	CsGy5G004080
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0019752 - carboxylic acid metabolic process (biological process) GO:0005737 - cytoplasm (cellular component) GO:0004459 - L-lactate dehydrogenase activity (molecular function)
InterPro domains	IPR001236 - Lactate/malate dehydrogenase, N-terminal IPR036291 - NAD(P)-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039708.1 L-lactate dehydrogenase A [Cucumis melo var. makuwa]

1.08e-39

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGS++CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

KAE8647895.1 hypothetical protein Csa_000230 [Cucumis sativus]

2.74e-40

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

KAG7036127.1 hypothetical protein SDJN02_02927, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.08e-39

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI          RNVALFQKIVP LVQ+SP  ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

XP_004151663.3 L-lactate dehydrogenase A-like [Cucumis sativus]

2.74e-40

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

XP_038906687.1 L-lactate dehydrogenase A [Benincasa hispida]

2.74e-40

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CI+T GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKM5 Ldh_1_N domain-containing protein

1.02e-42

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTY+AWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

A0A0A0KP88 Ldh_1_N domain-containing protein

7.65e-53

100

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

A0A1S3ATB9 L-lactate dehydrogenase

2.90e-39

79.59

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYS TAGS++CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

A0A5A7T9X6 L-lactate dehydrogenase

5.23e-40

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGS++CIVT GARQI          RNVALFQKIVP LVQFSP+ ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

A0A6J1H2Z1 L-lactate dehydrogenase

7.36e-40

80.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT ISASTDYSITAGSD+CIVT GARQI          RNVALFQKIVP LVQ+SP  ILLIVSN VDVLTYVAWKLSGFPSNRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

SwissProt top hits

e value

%identity

Alignment

P04642 L-lactate dehydrogenase A chain

4.5e-21

54.08

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        M+DLQH ++FL    I +S DYS+TA S + I+T GARQ           RNV +F+ I+P++V++SP+  LLIVSN VD+LTYVAWK+SGFP NRVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

P22988 L-lactate dehydrogenase A

3.7e-23

61.86

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Query:  LDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        LDLQHAA FLPR  IS  TD ++T  SD+ IVT GARQI          RNVAL++KIVP + + SP  +LL+VSN VDVLTYVAWKLSGFP++RVI
Subjt:  LDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

P22989 L-lactate dehydrogenase B (Fragment)

7.4e-24

59.79

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Query:  LDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        LDLQHAA FLPR  I + TD ++T  SD+ +VT GARQI          RNVAL++KIVP + + SP  +LL+VSN VDVLTYVAWKLSGFP++RVI
Subjt:  LDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

P29038 L-lactate dehydrogenase

2.3e-25

64.29

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT + + TD S+T GSD+ IVT GARQI          RNVALF+KIVP L + S   +LL+VSN VDVLTYVAWKLSGFP++RVI
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQI----------RNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

Q27888 L-lactate dehydrogenase

5.8e-21

53.61

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Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRV
        M+DLQH   F     + A TDYSITAGS +C+VT GARQ           RNV +F+ I+P LV++SP   +L+VSN VDVLTYV WKLSG P  RV
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRV

Arabidopsis top hits

e value

%identity

Alignment

AT4G17260.1 Lactate/malate dehydrogenase family protein

4.6e-29

67.35

Show/hide

Query:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI
        MLDLQHAA FLPRT I+AS DY +TAGSD+CIVT GARQ           RNVALF+ I+P L + SP  IL+IVSN VDVLTYVAWKLSGFP NRV+
Subjt:  MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQ----------IRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

Sequences

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CDS sequence

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ATGCTAGATCTCCAACACGCTGCTGTTTTTCTCCCTCGTACAAACATCAGCGCCTCCACTGATTACTCCATTACTGCTGGATCTGATATGTGTATTGTTACTGATGGTGC
TCGGCAGATCAGGAATGTTGCTCTGTTTCAGAAGATCGTTCCGTCGTTGGTTCAGTTCTCTCCTAAGATGATTCTTTTGATTGTTTCGAATCTGGTGGATGTTTTGACTT
ATGTTGCTTGGAAACTCTCTGGTTTTCCGTCGAATCGTGTGATTTGA

mRNA sequence

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Protein sequence

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MLDLQHAAVFLPRTNISASTDYSITAGSDMCIVTDGARQIRNVALFQKIVPSLVQFSPKMILLIVSNLVDVLTYVAWKLSGFPSNRVI

CsGy5G004080 (gene) of Cucumber (Gy14) v2.1 genome