; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G006900 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G006900
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL30
Genome locationGy14Chr5:4691594..4697034
RNA-Seq ExpressionCsGy5G006900
SyntenyCsGy5G006900
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647986.1 hypothetical protein Csa_021399 [Cucumis sativus]2.74e-172100Show/hide
Query:  GGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQM
        GGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQM
Subjt:  GGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQM

Query:  RQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQ
        RQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQ
Subjt:  RQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQ

Query:  NGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        NGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
Subjt:  NGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

XP_008461655.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo]5.74e-18194.76Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGG    YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RH DYPESPRGAPRERDVERSRQVYSPGYDNADEH QNGNGYHDKS   E +D  R NWR+SPGRTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

XP_031741884.1 LOW QUALITY PROTEIN: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis sativus]5.78e-18997.55Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPG GYGGGGGGGGG   G   RREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

XP_038892246.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida]1.49e-17592.39Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGG YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYG---RSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVS
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYG   RSRSRS+SRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVS
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYG---RSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVS

Query:  PGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        P RRH DYPESPRG PRERD ER+RQVYSPGYDNAD+H  NGNGYHDKS + E +D  R NWR+SPGRTSRSPSGSRSRSADASPRHGR
Subjt:  PGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

XP_038892248.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida]9.80e-17893.36Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGG YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRS+SRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSP R
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RH DYPESPRG PRERD ER+RQVYSPGYDNAD+H  NGNGYHDKS + E +D  R NWR+SPGRTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

TrEMBL top hitse value%identityAlignment
A0A0A0KNV5 RRM domain-containing protein1.46e-198100Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

A0A1S3CFP8 serine/arginine-rich SC35-like splicing factor SCL302.78e-18194.76Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGG    YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RH DYPESPRGAPRERDVERSRQVYSPGYDNADEH QNGNGYHDKS   E +D  R NWR+SPGRTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

A0A6J1CBL6 serine/arginine-rich SC35-like splicing factor SCL303.60e-16788.01Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGG    YGRRREQ HGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYY+GEPRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS+YGRSRSRSVSRSRSP HPSGSRSRYRSRSYSPAPRWRGDYSVSP R
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTS------RSPSGSRSRSADASPRHGR
        RH DYP SPRGAP ERD ERS+Q YSPGYDNAD H  +GNGYHDKS + E  D +R NWR+SPGR S      RSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTS------RSPSGSRSRSADASPRHGR

A0A6J1H0N2 serine/arginine-rich SC35-like splicing factor SCL303.37e-16688.54Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGG      YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG+PRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREI VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RSRSYSPAPRWRGDYSVSP R
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNAD--EHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RH DYP SPRGA RERD ER+RQVYSPGYDNAD  +   NGNGYHDK P+ E +D  R NWR SP RTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNAD--EHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

A0A6J1JIZ1 serine/arginine-rich SC35-like splicing factor SCL301.27e-16990.62Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV
        MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGG YGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG+PRGFAFVEFV
Subjt:  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFV

Query:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR
        DPYEASEAQYHMNGKKFAGREI VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RSRSYSPAPRWRGDYSVSP R
Subjt:  DPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGR

Query:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNAD--EHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        RH DYP SPRGA RERD ERSRQVYSPGYDNAD  +   NGNGYHDK P+ E +D  R NWR SP RTSRSPSGSRSRSADASPRHGR
Subjt:  RHTDYPESPRGAPRERDVERSRQVYSPGYDNAD--EHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

SwissProt top hitse value%identityAlignment
Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL281.1e-2039.22Show/hide
Query:  RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFA
        R YS  P   SPP  R+GY        P  R +   G  G                 LL+RN+P+D RP +LR  FERFG ++D+Y+P++YYTGEPRGF 
Subjt:  RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFA

Query:  FVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS
        FV++    +A+EA   MN K   GREI +V A E+RK P++MR       +G  GR   Y R+  RS  R    R+ S SRSR   R  S   + R D  
Subjt:  FVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS

Query:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSP
         SP RR      SP   PR     +SR   SP
Subjt:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSP

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL301.1e-7360.96Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAF
        MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG        RR   HGSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G+PRGFAF
Subjt:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAF

Query:  VEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS
        VEFVD Y+A EAQ  MN + FAGREITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSPR PS SRSRYRSRSYSPAPR RG   
Subjt:  VEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS

Query:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDN----ADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR
                     PRG   E D   SR+ YSPGY+     A +  +NG+    + P  E +D      R      SRSPSGSRSRS + SPR
Subjt:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDN----ADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR

Q9BRL6 Serine/arginine-rich splicing factor 85.5e-2038.49Show/hide
Query:  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPS---GY
        +L V N+     P+ LR  FE++G V DVYIP++ +T  PRGFAFV F D  +A +A+  M+G +  GRE+ V +A   R+   + RQ   RG S   GY
Subjt:  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPS---GY

Query:  GGRRSHYGR----SRSRSVSRSRSPR-HPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVY-SPGYDNADEHGQNGNGY
        G R   YGR     R R  SRSR P    S SRSRYR   YS +P  R  YS       + Y  SP    R R+       Y S GY N+     + +  
Subjt:  GGRRSHYGR----SRSRSVSRSRSPR-HPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVY-SPGYDNADEHGQNGNGY

Query:  HDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADAS
        H KS S         + ++S  R S+S S SRSRS   S
Subjt:  HDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADAS

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A1.1e-3140.35Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD
        R Y+P   SPP RGYG RGRSP  RG  GG             R      SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTG+PRGF F++F+D
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD

Query:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR
        P +A+EA++ M+G    GRE+TVV A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y+            P +R
Subjt:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR

Query:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        H    +S   +P++R  E+ R      Y  +  H  NG+     SP    + H R   R+   R +RS +  ++RS    PR  R
Subjt:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL331.1e-3345.04Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD
        R Y+P   SPP RGYG RGRSP  RG  G            GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG+PRGF FV+F+D
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD

Query:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR
        P +A++A++HM+G    GRE+TVV A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS          GDY   P RR
Subjt:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR

Query:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR
        H     SPR    ER   R     SP  D +   G++      KS S+       ++   SP R SRSPS  R+RS   SPR
Subjt:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 338.1e-3545.04Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD
        R Y+P   SPP RGYG RGRSP  RG  G            GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG+PRGF FV+F+D
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD

Query:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR
        P +A++A++HM+G    GRE+TVV A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS          GDY   P RR
Subjt:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR

Query:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR
        H     SPR    ER   R     SP  D +   G++      KS S+       ++   SP R SRSPS  R+RS   SPR
Subjt:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR

AT1G55310.2 SC35-like splicing factor 331.4e-3449.3Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD
        R Y+P   SPP RGYG RGRSP  RG  G            GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG+PRGF FV+F+D
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD

Query:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS-YSPAPRWRGDYSVSPGR
        P +A++A++HM+G    GRE+TVV A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   YSP PR     S+SP  
Subjt:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS-YSPAPRWRGDYSVSPGR

Query:  RHTD----YPESP
           D    Y  SP
Subjt:  RHTD----YPESP

AT1G55310.3 SC35-like splicing factor 333.4e-3343.54Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG------------
        R Y+P   SPP RGYG RGRSP  RG  G            GR R+ P  SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG            
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG------------

Query:  EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPR
        +PRGF FV+F+DP +A++A++HM+G    GRE+TVV A E+RK+P +MR R R G S +  RR    R+  R  SRSRSP  P   RSR RS        
Subjt:  EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPR

Query:  WRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR
          GDY   P RRH     SPR    ER   R     SP  D +   G++      KS S+       ++   SP R SRSPS  R+RS   SPR
Subjt:  WRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR

AT3G13570.1 SC35-like splicing factor 30A7.6e-3340.35Show/hide
Query:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD
        R Y+P   SPP RGYG RGRSP  RG  GG             R      SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTG+PRGF F++F+D
Subjt:  RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVD

Query:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR
        P +A+EA++ M+G    GRE+TVV A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y+            P +R
Subjt:  PYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRR

Query:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR
        H    +S   +P++R  E+ R      Y  +  H  NG+     SP    + H R   R+   R +RS +  ++RS    PR  R
Subjt:  HTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR

AT3G55460.1 SC35-like splicing factor 308.0e-7560.96Show/hide
Query:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAF
        MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG        RR   HGSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G+PRGFAF
Subjt:  MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAF

Query:  VEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS
        VEFVD Y+A EAQ  MN + FAGREITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSPR PS SRSRYRSRSYSPAPR RG   
Subjt:  VEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYS

Query:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDN----ADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR
                     PRG   E D   SR+ YSPGY+     A +  +NG+    + P  E +D      R      SRSPSGSRSRS + SPR
Subjt:  VSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDN----ADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGATACAGTCCACCATACCATAGTCCACCAAGAAGAGGGTATGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGCGGTGGAGGTGGCGGTGG
CGGTGGTGGTGGGTATGGAAGGCGAAGGGAACAACCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCGGAGGAGCTTAGAGCGCCATTTGAGAGGT
TTGGACTTGTTCGAGACGTGTATATTCCAAAGGACTATTACACAGGTGAGCCTCGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTACGAGGCTTCTGAAGCTCAGTAC
CATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGCCAAAGGAGTAGAAGGGGACCATCTGG
CTATGGTGGACGCCGTTCTCATTATGGACGTTCTAGATCACGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCTTCGGGTTCAAGAAGTAGATACCGATCAAGGTCTT
ACTCTCCAGCTCCAAGGTGGCGAGGCGACTATTCTGTTTCCCCTGGTAGAAGGCACACAGATTACCCTGAATCACCTAGGGGTGCTCCTCGTGAGCGAGATGTTGAGAGG
AGCCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGAGCACGGTCAGAATGGAAATGGATATCACGACAAGTCACCTTCGGTAGAACATCAAGATCACCTTCGGGT
TAATTGGAGGGCATCTCCTGGTAGAACATCAAGATCACCTTCGGGGTCCCGATCCCGCTCTGCTGATGCATCCCCCAGACATGGTAGATGA
mRNA sequenceShow/hide mRNA sequence
AATTTTTAAGAGAGGACCAAACAACGTTATAAAAATCCAAACCCTACATTTGCATCGCAGTCTTCGAGAGTTCACAAAAATCAGATCAAAGGAAGAGTCTTTCTTCGCAT
TTTCTTCTCTTCATTCTCTTACCTTCAGGTCAAGAAATGGGGAAAAGAGGTGATGAGAGGAGCCTTTTTGTCGAACCCTCTCGATTCCCTTTTAATATAAACGGATGTAT
CTTGTGTGTGTTTATAATCTTCAACATTTTTAACATGTATCTTAGCAGGCAATTGAGAGTTTCAGTGGGACCTGAGCCTATGAAGTGTAGCTTAGGGTTTTAACATTCAG
AACCCCCTTTTTCAGTTTAGGATCATAAGTGGGTGTCATTGGATTAACTACTATTCTATTTAGGTAGTAATTAGTTTGAATTGGTAGGAAGTTTTGAAAAATATGCATCT
TAATTACTGACCTCACCTGATCATTGTTGTGGACAGGTTGAAGCATGAGAAGATACAGTCCACCATACCATAGTCCACCAAGAAGAGGGTATGGTGGTCGTGGAAGAAGC
CCCCCGGGTAGGGGTTATGGTGGTGGCGGTGGAGGTGGCGGTGGCGGTGGTGGTGGGTATGGAAGGCGAAGGGAACAACCTCATGGTAGCCTTTTGGTTAGAAATATTCC
TATGGATTGCAGGCCGGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGAGACGTGTATATTCCAAAGGACTATTACACAGGTGAGCCTCGAGGATTTGCAT
TTGTGGAGTTTGTTGATCCTTACGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAG
AGGCCAGAACAGATGCGCCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGACGTTCTAGATCACGTTCAGTATCCAGATCACGCTCCCC
TCGCCATCCTTCGGGTTCAAGAAGTAGATACCGATCAAGGTCTTACTCTCCAGCTCCAAGGTGGCGAGGCGACTATTCTGTTTCCCCTGGTAGAAGGCACACAGATTACC
CTGAATCACCTAGGGGTGCTCCTCGTGAGCGAGATGTTGAGAGGAGCCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGAGCACGGTCAGAATGGAAATGGATAT
CACGACAAGTCACCTTCGGTAGAACATCAAGATCACCTTCGGGTTAATTGGAGGGCATCTCCTGGTAGAACATCAAGATCACCTTCGGGGTCCCGATCCCGCTCTGCTGA
TGCATCCCCCAGACATGGTAGATGATTTTTCTTTGAGAAATATGACAGTAGTCGATGATGTAAACCATCTTTTCTAATATAAAACATTTGTTATCCTCCACTATCCAGGA
AAAGTTTTTAGATTGTATTTTGTACGATGTTCTTAGATGTGTTGGGATGTTCTAGACGGGAATCTTATTTGCTCTCATTTGAAGTTTAAAAAATATTATGCTACTTTTCT
GGATTACTATCTCATTATTCATATTCATTAGCATCATCGGTTAAACCGTGGCCCTTCTCATTCACAATGTGCTATACACATGAAAATTTTGATCTCTACAGGTTCACTTT
CAACCATCTTGACTTGGTTGAATTTTTTTGGAAAAATATGATTCAATGCTTCTTTAAAAAGTTAC
Protein sequenceShow/hide protein sequence
MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQY
HMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVER
SRQVYSPGYDNADEHGQNGNGYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR