CuGenDBv2

Gene ID	CsGy5G009175
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Gy14Chr5:7327133..7327666
RNA-Seq Expression	CsGy5G009175
Synteny	CsGy5G009175
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.20e-97

87.01

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGEL KKLESLYLTKSLPNK+Y+KEKFFGYKM QSK LEENL EFQKI+VDLNNI EKMS+ENQAVI+LN LPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYG DSLTMS+VLDALKTR+LEIKKE KDGELLMARG SEKKSWKGKEKSFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

TYK05815.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.39e-96

87.01

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGEL KKLESLYLTKSLPNK+Y+KEKFFGYKM QSK LEENL EFQKI+VDLNNI EKMS+ENQAVI+LN LPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYG DSLTMS+VLDALKTR+LEIKKE KDGELLMARG SEKKSWKGKEKSFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.61e-95

85.31

Show/hide

Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEM YSTILLY+S  VLRLVDEATT GELWKKLESLYL KSL NK+Y+KEKFFGYKMDQSK LEENL EFQKIIVDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYGRDSL MS++LDALKTR+LEIKKE KDGELLMAR  SEKKSWKGKE+S RSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

TYK10877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.20e-97

88.14

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRL DE TTTGELWKKLESLYLTKSLPNK+Y+KEKFFGYKMDQSK LEENL EFQKI+VDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
        TYREVKA IKYGRDSLTMS+VLDALKTR+LEIKKERKDGELLMARG SEKKSWKGKE++FRSKSK K R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.49e-95

90.4

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGELWKKLESLYLTKSLPNK+Y+KEKFFGYKMDQSK LEENL EFQKI+VDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
        TYREVKA IKYGRDSLTMS+VLDALKTR+LEIKKERKDGELLMARG SEKKSWKGKE+SFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VE98 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.52e-97

87.01

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGEL KKLESLYLTKSLPNK+Y+KEKFFGYKM QSK LEENL EFQKI+VDLNNI EKMS+ENQAVI+LN LPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYG DSLTMS+VLDALKTR+LEIKKE KDGELLMARG SEKKSWKGKEKSFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

A0A5D3C356 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.72e-97

87.01

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGEL KKLESLYLTKSLPNK+Y+KEKFFGYKM QSK LEENL EFQKI+VDLNNI EKMS+ENQAVI+LN LPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYG DSLTMS+VLDALKTR+LEIKKE KDGELLMARG SEKKSWKGKEKSFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.07e-97

88.14

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRL DE TTTGELWKKLESLYLTKSLPNK+Y+KEKFFGYKMDQSK LEENL EFQKI+VDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
        TYREVKA IKYGRDSLTMS+VLDALKTR+LEIKKERKDGELLMARG SEKKSWKGKE++FRSKSK K R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.80e-96

85.31

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Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEM YSTILLY+S  VLRLVDEATT GELWKKLESLYL KSL NK+Y+KEKFFGYKMDQSK LEENL EFQKIIVDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
         YREVKA IKYGRDSL MS++LDALKTR+LEIKKE KDGELLMAR  SEKKSWKGKE+S RSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

A0A5D3DNU1 Putative gag-pol polyprotein

1.20e-95

90.4

Show/hide

Query:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE
        MDEMAYSTILLY+S  VLRLVDEATTTGELWKKLESLYLTKSLPNK+Y+KEKFFGYKMDQSK LEENL EFQKI+VDLNNI EKMSDENQAVI+LNSLPE
Subjt:  MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPE

Query:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE
        TYREVKA IKYGRDSLTMS+VLDALKTR+LEIKKERKDGELLMARG SEKKSWKGKE+SFRSKSKGK R CFLCHKE
Subjt:  TYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-19

33.7

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Query:  MDEMAYSTILLYVSYNVL-RLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLP
        +DE A S I L++S +V+  ++DE T  G +W +LESLY++K+L NKLYLK++ +   M +      +L  F  +I  L N+  K+ +E++A+++LNSLP
Subjt:  MDEMAYSTILLYVSYNVL-RLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLP

Query:  ETYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLM--ARGMSEKKS-----WKGKEKSFRSKSKGKGRNCFLCHK
         +Y  +  TI +G+ ++ +  V  AL       KK    G+ L+   RG S ++S       G     +++SK + RNC+ C++
Subjt:  ETYREVKATIKYGRDSLTMSVVLDALKTRSLEIKKERKDGELLM--ARGMSEKKS-----WKGKEKSFRSKSKGKGRNCFLCHK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGAAATGGCCTATTCAACGATCCTTCTGTATGTGTCATATAATGTGCTTAGGCTTGTAGATGAGGCTACTACTACAGGGGAGTTGTGGAAGAAGCTAGAAAGTCT
TTACTTGACAAAGTCATTGCCAAATAAATTATATCTAAAGGAGAAATTTTTTGGATATAAGATGGACCAAAGTAAAGGCTTAGAAGAGAACTTGAAAGAATTTCAGAAGA
TTATAGTTGATCTTAATAACATCAGTGAGAAGATGTCAGATGAGAATCAAGCAGTGATTATTTTAAATTCATTACCTGAAACATATCGAGAGGTTAAGGCAACTATTAAA
TATGGTCGAGATTCATTGACCATGAGTGTAGTGTTGGATGCCTTAAAGACTAGAAGTCTCGAAATTAAGAAAGAACGCAAGGATGGAGAGTTACTCATGGCTAGAGGAAT
GAGTGAGAAAAAGAGCTGGAAAGGCAAAGAGAAGAGTTTCAGGTCGAAATCAAAGGGAAAAGGTAGAAATTGTTTCTTATGTCATAAAGAATGA

mRNA sequence

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Protein sequence

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MDEMAYSTILLYVSYNVLRLVDEATTTGELWKKLESLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLKEFQKIIVDLNNISEKMSDENQAVIILNSLPETYREVKATIK
YGRDSLTMSVVLDALKTRSLEIKKERKDGELLMARGMSEKKSWKGKEKSFRSKSKGKGRNCFLCHKE

CsGy5G009175 (gene) of Cucumber (Gy14) v2.1 genome