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CsGy5G009285 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G009285
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationGy14Chr5:7598619..7599014
RNA-Seq ExpressionCsGy5G009285
SyntenyCsGy5G009285
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.24e-4771.32Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVVGS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.12e-4770.99Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT +SQ DL  ++T NPI  +SS  N FVPTSTLFLLSNICN VP+RLDSTNY+L KYQVSSILKAH  FGHIDD+  CPPK LSS T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGSPS
        L WLSR QALITLINATLS SALAHVVGS S
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGSPS

KGN50818.1 hypothetical protein Csa_018838 [Cucumis sativus]3.48e-89100Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGSPS
        LHWLSRDQALITLINATLSPSALAHVVGSPS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGSPS

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.24e-4771.32Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVVGS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]5.59e-4770.54Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT +SQ DL   +T NPIP +SS  N  V TSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  K +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVV S
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

TrEMBL top hitse value%identityAlignment
A0A0A0KMJ5 Uncharacterized protein1.69e-89100Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGSPS
        LHWLSRDQALITLINATLSPSALAHVVGSPS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGSPS

A0A5A7UTE5 Putative mitochondrial protein3.51e-4771.32Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVVGS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

A0A5A7VGG0 Retrotransposon protein5.42e-4870.99Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT +SQ DL  ++T NPI  +SS  N FVPTSTLFLLSNICN VP+RLDSTNY+L KYQVSSILKAH  FGHIDD+  CPPK LSS T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGSPS
        L WLSR QALITLINATLS SALAHVVGS S
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGSPS

A0A5D3BEU0 Putative mitochondrial protein3.51e-4771.32Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  + +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVVGS
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

A0A5D3CCL2 Retrotransposon protein2.70e-4770.54Show/hide
Query:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH
        MAT +SQ DL   +T NPIP +SS  N  V TSTLFLLSNICN VP+RLDSTNYVL KYQVSSILKAH +FGHIDD+  CPPK L S T GT  K +  +
Subjt:  MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYH

Query:  LHWLSRDQALITLINATLSPSALAHVVGS
        L WLSRDQALITLINATLS SAL HVV S
Subjt:  LHWLSRDQALITLINATLSPSALAHVVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTCCAACTCTCAATTTGATCTCATCTCCACTAAAACTCCTAATCCCATCCCCACAAATTCATCACCACAAAATCAATTTGTTCCTACTTCCACTCTCTTTTT
GCTATCCAATATTTGTAACTTTGTTCCCCTTCGTCTAGACTCCACCAATTATGTTCTAGGGAAATACCAGGTTTCTTCCATCCTCAAAGCCCATTTCGTGTTTGGTCACA
TTGACGATTCTTTCTCGTGTCCTCCAAAATTTTTATCTTCACCAACTACTGGAACCACTCCTAAAACCAGTTCTTATCATCTTCATTGGCTCTCCCGTGACCAAGCCCTT
ATCACCCTTATAAACGCAACCTTATCACCTTCTGCCCTTGCTCATGTTGTCGGCTCACCCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCTCCAACTCTCAATTTGATCTCATCTCCACTAAAACTCCTAATCCCATCCCCACAAATTCATCACCACAAAATCAATTTGTTCCTACTTCCACTCTCTTTTT
GCTATCCAATATTTGTAACTTTGTTCCCCTTCGTCTAGACTCCACCAATTATGTTCTAGGGAAATACCAGGTTTCTTCCATCCTCAAAGCCCATTTCGTGTTTGGTCACA
TTGACGATTCTTTCTCGTGTCCTCCAAAATTTTTATCTTCACCAACTACTGGAACCACTCCTAAAACCAGTTCTTATCATCTTCATTGGCTCTCCCGTGACCAAGCCCTT
ATCACCCTTATAAACGCAACCTTATCACCTTCTGCCCTTGCTCATGTTGTCGGCTCACCCTCATAA
Protein sequenceShow/hide protein sequence
MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQAL
ITLINATLSPSALAHVVGSPS